RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 HELLSQ9NRZ9 838 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 MYO3AQ8NEV4 1616 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 CTSWP56202 376 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 SPC24Q8NBT2 197 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 ESR2Q92731 530 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 SLC26A6Q9BXS9 759 aa16.52■□□□□ 0.24
SHROOM1-203ENST00000378679 TNS3Q68CZ2 1445 aa16.52■□□□□ 0.23
SHROOM1-203ENST00000378679 ZAP70P43403 619 aa16.52■□□□□ 0.23
SHROOM1-203ENST00000378679 CCDC173Q0VFZ6 552 aa16.52■□□□□ 0.23
SHROOM1-203ENST00000378679 ANKRD2Q9GZV1 360 aa16.52■□□□□ 0.23
SHROOM1-203ENST00000378679 TMEM131LA2VDJ0 1609 aa16.52■□□□□ 0.23
SHROOM1-203ENST00000378679 MBD4O95243 580 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 SMC2O95347 1197 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 CRKLP46109 303 aaKnown RBP16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 APOBRQ0VD83 1088 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 KRT23Q9C075 422 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 MAGEB6P1A0A0J9YX57 407 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 APPBP2Q92624 585 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 CCDC39Q9UFE4 941 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 SLC27A2O14975 620 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 IL6STP40189 918 aaPredicted RBP16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 KLHL40Q2TBA0 621 aa16.51■□□□□ 0.23
SHROOM1-203ENST00000378679 INTS4Q96HW7 963 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 PUS3Q9BZE2 481 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 CNNM2Q9H8M5 875 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 STAP2Q9UGK3 403 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 CCDC183Q5T5S1 534 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 GPAA1O43292 621 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 DTNBO60941 627 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 RAB3GAP1Q15042 981 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 ZNF804AQ7Z570 1209 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 CKAP2LQ8IYA6 745 aa16.5■□□□□ 0.23
SHROOM1-203ENST00000378679 WWC3Q9ULE0 1092 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 GSTO1P78417 241 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 HOMER1Q86YM7 354 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 OSBPL3Q9H4L5 887 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 GREM2Q9H772 168 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 MROH2AA6NES4 1674 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 CEP57L1Q8IYX8 460 aa16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 DBNLQ9UJU6 430 aaKnown RBP16.49■□□□□ 0.23
SHROOM1-203ENST00000378679 IPO7O95373 1038 aaKnown RBP16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 IGKV5-2P06315 115 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 HSPA4P34932 840 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 ZSCAN30Q86W11 494 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 PDILTQ8N807 584 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 SEC63Q9UGP8 760 aaKnown RBP16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 RIMBP2O15034 1052 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 TLR7Q9NYK1 1049 aaKnown RBP16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 CNPY2Q9Y2B0 182 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 PARP3Q9Y6F1 533 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 GNAT2P19087 354 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 HIBADHP31937 336 aaKnown RBP16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 RPS8P62241 208 aaKnown RBP16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 TMTC2Q8N394 836 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 KAT14Q9H8E8 782 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 A0A0D9SFI3 127 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 NLRP5P59047 1200 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 MCM9Q9NXL9 1143 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 PALD1Q9ULE6 856 aa16.48■□□□□ 0.23
SHROOM1-203ENST00000378679 SYT1P21579 422 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 UBE2HP62256 183 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 DNM1Q05193 864 aaKnown RBP16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 CCDC96Q2M329 555 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 FSIP1Q8NA03 581 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 SEC62Q99442 399 aaKnown RBP16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 VAT1LQ9HCJ6 419 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 CEP131Q9UPN4 1083 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 ALG1Q9BT22 464 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 ZSCAN16Q9H4T2 348 aaPredicted RBP16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 NEURL4Q96JN8 1562 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 F13A1P00488 732 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 LDHBP07195 334 aaKnown RBP16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 KIF5BP33176 963 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 DENND2AQ9ULE3 1009 aa16.47■□□□□ 0.23
SHROOM1-203ENST00000378679 NCAPD2Q15021 1401 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 MROH5Q6ZUA9 1318 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 IFIT1BQ5T764 474 aaKnown RBP16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 RXRAP19793 462 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 RPS6KB1P23443 525 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 PTH1RQ03431 593 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 RTN1Q16799 776 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 QTRT2Q9H974 415 aaKnown RBP16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 ARMT1Q9H993 441 aa16.46■□□□□ 0.23
SHROOM1-203ENST00000378679 SERPINC1P01008 464 aa16.46■□□□□ 0.22
SHROOM1-203ENST00000378679 CLCN1P35523 988 aa16.46■□□□□ 0.22
SHROOM1-203ENST00000378679 PTPN12Q05209 780 aaKnown RBP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 USP48Q86UV5 1035 aa16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 DIP2AQ14689 1571 aa16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 USPL1Q5W0Q7 1092 aa16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 CCAR2Q8N163 923 aaKnown RBP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 TRPC5Q9UL62 973 aaPredicted RBP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 UFL1O94874 794 aa16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 SSBP05455 408 aaKnown RBP eCLIP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 KRT18P05783 430 aaKnown RBP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 TNNT3P45378 269 aaPredicted RBP16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 NLRP10Q86W26 655 aa16.45■□□□□ 0.22
SHROOM1-203ENST00000378679 CRB1P82279 1406 aa16.44■□□□□ 0.22
SHROOM1-203ENST00000378679 EPHA10Q5JZY3 1008 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms