RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 RAPGEF3O95398 923 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 VSNL1P62760 191 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 SARM1Q6SZW1 724 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 ZNF232Q9UNY5 417 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 POLR3AO14802 1390 aaPredicted RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 SHPRHQ149N8 1683 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 PSDA5PKW4 1024 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 KRT85P78386 507 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 TSPYL6Q8N831 410 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 IGSF22Q8N9C0 903 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 RABGGTAQ92696 567 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 SPATA32Q96LK8 384 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 THUMPD2Q9BTF0 503 aaKnown RBP11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 MRFAP1Q9Y605 127 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 CLTCL1P53675 1640 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 VWA3AA6NCI4 1184 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 WDHD1O75717 1129 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 MAP4K4O95819 1239 aaPredicted RBP11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 CSB-PGBD3P0DP91 1061 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 RWDD2BP57060 319 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 FAM71BQ8TC56 605 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 BCAS4Q8TDM0 211 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 PGBD1Q96JS3 809 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 FAM210AQ96ND0 272 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 ACBD3Q9H3P7 528 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 DCTPP1Q9H773 170 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 C9orf84Q5VXU9 1444 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 SHANK2Q9UPX8 1470 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 COQ9O75208 318 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 A1BGP04217 495 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 FNTAP49354 379 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 KLHL23Q8NBE8 558 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 PAIP2Q9BPZ3 127 aaKnown RBP11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 LMCD1Q9NZU5 365 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 L1RE1Q9UN81 338 aa11.1□□□□□ -0.63
PTCHD4-201ENST00000339488 ADGRL2O95490 1459 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 HDGFP51858 240 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 CEP85LQ5SZL2 805 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 UNC5CLQ8IV45 518 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 SMARCC1Q92922 1105 aaPredicted RBP11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 A1CFQ9NQ94 594 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 ZNF202O95125 648 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 PYGBP11216 843 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 RAB27AP51159 221 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 GSDMDP57764 484 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 CHMP4BP1P59074 171 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 RBBP5Q15291 538 aaKnown RBP11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 DESI2Q9BSY9 194 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 YIPF3Q9GZM5 350 aa11.09□□□□□ -0.63
PTCHD4-201ENST00000339488 A0A1B0GUA9 196 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 MED14O60244 1454 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 LGR5O75473 907 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 GBP2P32456 591 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 RANBP1P43487 201 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 MAP3K9P80192 1104 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 CCDC181Q5TID7 509 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 TSPYL2Q9H2G4 693 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 KCND1Q9NSA2 647 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 DDX19AQ9NUU7 478 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 TPCN1Q9ULQ1 816 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 ABCC11Q96J66 1382 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 SYF2O95926 243 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 TMPOP42166 694 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 FOSBP53539 338 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 TRAF1Q13077 416 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 MTA1Q13330 715 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 BRD3Q15059 726 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 POTEDQ86YR6 584 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 HINFPQ9BQA5 517 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 FAM107BQ9H098 131 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 KLC4Q9NSK0 619 aa11.08□□□□□ -0.64
PTCHD4-201ENST00000339488 A0A0U1RQJ8 604 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 MRPL12P52815 198 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 ST3GAL1Q11201 340 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 ACCSLQ4AC99 568 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 GSPT2Q8IYD1 628 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 RPUSD2Q8IZ73 545 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 CCDC12Q8WUD4 166 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 ATRIPQ8WXE1 791 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 FTOQ9C0B1 505 aaKnown RBP eCLIP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 OSBPL5Q9H0X9 879 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 KDM4CQ9H3R0 1056 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 FRMPD1Q5SYB0 1578 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 NEO1Q92859 1461 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 YTHDC2Q9H6S0 1430 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 EVC2Q86UK5 1308 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 KIF4AO95239 1232 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 DDR1Q08345 913 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 RNF187Q5TA31 235 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 LEO1Q8WVC0 666 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 LMBR1Q8WVP7 490 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 POGZQ7Z3K3 1410 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 KNDC1Q76NI1 1749 aa11.07□□□□□ -0.64
PTCHD4-201ENST00000339488 IRAK1P51617 712 aa11.06□□□□□ -0.64
PTCHD4-201ENST00000339488 PDE1AP54750 535 aa11.06□□□□□ -0.64
PTCHD4-201ENST00000339488 COL9A3Q14050 684 aaPredicted RBP11.06□□□□□ -0.64
PTCHD4-201ENST00000339488 RBM43Q6ZSC3 357 aaKnown RBP11.06□□□□□ -0.64
PTCHD4-201ENST00000339488 MYOM1P52179 1685 aa11.06□□□□□ -0.64
PTCHD4-201ENST00000339488 RPGRIP1LQ68CZ1 1315 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms