RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 RASSF4Q9H2L5 321 aa17.26■□□□□ 0.35
SDC1-205ENST00000447124 TOR3AQ9H497 397 aa17.26■□□□□ 0.35
SDC1-205ENST00000447124 DNAJC27Q9NZQ0 273 aa17.26■□□□□ 0.35
SDC1-205ENST00000447124 DYNC1I1O14576 645 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 PLATP00750 562 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 LHBP01229 141 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 OSMP13725 252 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 EGR1P18146 543 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 PRTN3P24158 256 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 ZNF121P58317 390 aaPredicted RBP17.25■□□□□ 0.35
SDC1-205ENST00000447124 POU4F2Q12837 409 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 RBMS3Q6XE24 437 aaKnown RBP17.25■□□□□ 0.35
SDC1-205ENST00000447124 SHFQ7M4L6 423 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 PARP8Q8N3A8 854 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 REEP6Q96HR9 211 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 MS4A7Q9GZW8 240 aaPredicted RBP17.25■□□□□ 0.35
SDC1-205ENST00000447124 OPA3Q9H6K4 179 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 BRD7Q9NPI1 651 aa17.25■□□□□ 0.35
SDC1-205ENST00000447124 hCG_38984A0A1B0GV85 526 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 TCRBV3S1A0A5B6 114 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 DNAJC9-AS1A6NH13 148 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 PRR23D1E9PI22 279 aaPredicted RBP17.24■□□□□ 0.35
SDC1-205ENST00000447124 PHYHO14832 338 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 GYG2O15488 501 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 SELENOFO60613 162 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 PRR23D2P0DMB1 279 aaPredicted RBP17.24■□□□□ 0.35
SDC1-205ENST00000447124 HSD11B1P28845 292 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 TIGD6Q17RP2 521 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 AWAT1Q58HT5 328 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 TMEM236Q5W0B7 351 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 C9orf139Q6ZV77 190 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 RHOUQ7L0Q8 258 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 SPATA24Q86W54 205 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 CPOQ8IVL8 374 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 PAPD5Q8NDF8 572 aaKnown RBP17.24■□□□□ 0.35
SDC1-205ENST00000447124 BBS1Q8NFJ9 593 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 KLHDC2Q9Y2U9 406 aa17.24■□□□□ 0.35
SDC1-205ENST00000447124 OOEPA6NGQ2 149 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 A6NLC8 198 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 ANKRD30BLA7E2S9 258 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 FKBP6O75344 327 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 GYPAP02724 150 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 HMGN1P05114 100 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 GSK3AP49840 483 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 FGF12P61328 243 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 ELF3P78545 371 aaPredicted RBP17.23■□□□□ 0.35
SDC1-205ENST00000447124 CBX1P83916 185 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 BAMBIQ13145 260 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 OR8B8Q15620 311 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 C3orf56Q8N813 242 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 OTOSQ8NHW6 89 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 THEM6Q8WUY1 208 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 MMADHCQ9H3L0 296 aaPredicted RBP17.23■□□□□ 0.35
SDC1-205ENST00000447124 SMURF1Q9HCE7 757 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 ERVK-18Q9QC07 812 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 POMPQ9Y244 141 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 RHBDD3Q9Y3P4 386 aa17.23■□□□□ 0.35
SDC1-205ENST00000447124 TRAV38-1A0A0B4J264 116 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 TRAV40A0A0B4J280 105 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.22■□□□□ 0.35
SDC1-205ENST00000447124 ADAM20O43506 726 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 E2F6O75461 281 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 APOC1P02654 83 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 H2BFMP0C1H6 154 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 HKR1P10072 659 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 ANXA8P13928 327 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 PAICSP22234 425 aaKnown RBP17.22■□□□□ 0.35
SDC1-205ENST00000447124 SLC2A5P22732 501 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 HCCSP53701 268 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 SLC9A3R2Q15599 337 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 FAM90A1Q86YD7 464 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 OR1M1Q8NGA1 313 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 OR52H1Q8NGJ2 320 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 BCAS4Q8TDM0 211 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 PGAM5Q96HS1 289 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 OR10A2Q9H208 303 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 SP140LQ9H930 580 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 C14orf119Q9NWQ9 140 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 DNAJB9Q9UBS3 223 aa17.22■□□□□ 0.35
SDC1-205ENST00000447124 IGHV3OR15-7A0A075B7D8 119 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 MDFIC2A0A1B0GVS7 189 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 LYNP07948 512 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 NPY4RP50391 375 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 CSNK2BP67870 215 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 MZT1Q08AG7 82 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 FLOT2Q14254 428 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 KCNJ8Q15842 424 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 DNAL1Q4LDG9 190 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 TEX36Q5VZQ5 186 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 OR8S1Q8NH09 359 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 TAF15Q92804 592 aaKnown RBP eCLIP17.21■□□□□ 0.35
SDC1-205ENST00000447124 LYZL4Q96KX0 146 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 TECTBQ96PL2 329 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 ZNF556Q9HAH1 456 aa17.21■□□□□ 0.35
SDC1-205ENST00000447124 hCG_1807616A0A1W2PRN6 198 aa17.2■□□□□ 0.34
SDC1-205ENST00000447124 NDUFA2O43678 99 aa17.2■□□□□ 0.34
SDC1-205ENST00000447124 ENSAO43768 121 aaKnown RBP17.2■□□□□ 0.34
SDC1-205ENST00000447124 HOXB6P17509 224 aaKnown RBP17.2■□□□□ 0.34
SDC1-205ENST00000447124 ALOX5APP20292 161 aa17.2■□□□□ 0.34
SDC1-205ENST00000447124 ACKR3P25106 362 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms