RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FAM74A1Q5RGS3 127 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SYT9Q86SS6 491 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 LMF1Q96S06 567 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 PIGQQ9BRB3 760 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 QRSL1Q9H0R6 528 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SRA1Q9HD15 236 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 NPIPA5A0A0B4J1W7 369 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF850A8MQ14 1090 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 NPIPA7E9PJI5 369 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 NPIPA8P0DM63 369 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF35P13682 527 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 UNC119Q13432 240 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 C1orf61Q13536 156 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RBM39Q14498 530 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM128Q5BJH2 165 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SCGB1C1Q8TD33 95 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SLC22A18Q96BI1 424 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 MARS2Q96GW9 593 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RPH3AQ9Y2J0 694 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TRBV2A0A0J9YWF9 115 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 LOC100289279A0A1B0GTE1 492 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 DCTN6O00399 190 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 IGKV3-11P04433 115 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PNMTP11086 282 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 EFNB2P52799 333 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 UCP3P55916 312 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 UBE2IP63279 158 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PLA2G7Q13093 441 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SRSF7Q16629 238 aaKnown RBP eCLIP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 GXYLT1Q4G148 440 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SLC35F2Q8IXU6 374 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF679Q8IYX0 411 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FAM71E2Q8N5Q1 922 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ARL11Q969Q4 196 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FOXRED1Q96CU9 486 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 R3HDM4Q96D70 268 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ST6GALNAC5Q9BVH7 336 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ARRDC1-AS1Q9H2J1 176 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 POFUT1Q9H488 388 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 RGCCQ9H4X1 137 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 THAP10Q9P2Z0 257 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 GDF2Q9UK05 429 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 METTL21EPA6NDL7 271 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HCRTR2O43614 444 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CEACAM5P06731 702 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF708P17019 499 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HSD17B7P56937 341 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 KIR2DS3Q14952 304 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HIST3H3Q16695 136 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 DEFB110Q30KQ9 67 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PLEKHN1Q494U1 663 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ACTBL2Q562R1 376 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 KRBOX4Q5JUW0 171 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SSX9Q7RTT3 188 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 C12orf76Q8N812 135 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ADPRHL1Q8NDY3 354 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR51A7Q8NH64 312 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FER1L6-AS2Q96M78 137 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 MACROD1Q9BQ69 325 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TM2D1Q9BX74 207 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ACTR3CQ9C0K3 210 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SLC26A1Q9H2B4 701 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 Q9N2J8 555 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HRASLS2Q9NWW9 162 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TAS2R3Q9NYW6 316 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CLEC1BQ9P126 229 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 LHX6Q9UPM6 363 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 A0A1B0GVC2 190 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 MSGN1A6NI15 193 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 STMND1H3BQB6 276 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 BGLAPP02818 100 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 RHOP08100 348 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PVALBP20472 110 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 AK4P27144 223 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SPSB3Q6PJ21 355 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 IL20RBQ6UXL0 311 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SHISA6Q6ZSJ9 500 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 C5orf24Q7Z6I8 188 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 LRRC25Q8N386 305 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR51T1Q8NGJ9 327 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR9A2Q8NGT5 310 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 OR5R1Q8NH85 324 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 A0A0U1RQK1 487 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FITM1A5D6W6 292 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 FAM183AA6NL82 134 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 PIP5K1CO60331 668 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HTR3BO95264 441 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CD46P15529 392 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 RAB5AP20339 215 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM50BP56557 158 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HIST1H3AP68431 136 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HIST2H3PS2Q5TEC6 136 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 SFRP4Q6FHJ7 346 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 EIF5AL1Q6IS14 154 aaKnown RBP4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CORO6Q6QEF8 472 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 HIST2H3AQ71DI3 136 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 ZAR1Q86SH2 424 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CBLN2Q8IUK8 224 aa4.76□□□□□ -1.65
SYNE1-220ENST00000471834 CARFQ8N187 725 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms