RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CRHP06850 196 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 AKR1C8PQ5T2L2 129 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TFAP2EQ6VUC0 442 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 OPALINQ96PE5 141 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 CD320Q9NPF0 282 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TIMM9Q9Y5J7 89 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TAF1P21675 1872 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 IGHV1-69-2A0A0G2JMI3 117 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 A8MXE2 369 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 HSBP1L1C9JCN9 74 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 AGTR1P30556 359 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 HOXC8P31273 242 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 PTGFRP43088 359 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 EMDP50402 254 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 UBE2KP61086 200 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 BAXQ07812 192 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 CRMP1Q14194 572 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 OGFOD3Q6PK18 319 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 CREB3L2Q70SY1 520 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM255BQ8WV15 326 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 RAB3CQ96E17 227 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 C4orf36Q96KX1 117 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 Q96M85 177 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 OR6C3Q9NZP0 311 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TUBD1Q9UJT1 453 aa8.21□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM212A6NML5 194 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TMPRSS11DO60235 418 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 CT45A10P0DMU9 189 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF32P17041 273 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 IL13RA1P78552 427 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 CLINT1Q14677 625 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 USF2Q15853 346 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 OR4D10Q8NGI6 311 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 OLIG1Q8TAK6 271 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM158Q8WZ71 300 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 RGCCQ9H4X1 137 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 MOB1AQ9H8S9 216 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SEBOXQ9HB31 216 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM30AQ9NV96 361 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM53CQ9NYF3 392 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 PILRAQ9UKJ1 303 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TOX4O94842 621 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 CR2P20023 1033 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 RAB4AP20338 218 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 PRSS3P35030 304 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 PRSS41Q7RTY9 318 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC22A24Q8N4F4 322 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SIMC1Q8NDZ2 872 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM56Q96MV1 263 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 DUX5Q96PT3 197 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 GP6Q9HCN6 339 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 GPR45Q9Y5Y3 372 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 URGCP-MRPS24S4R325 110 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC2A10O95528 541 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 CD80P33681 288 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 FOXA1P55317 472 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 DPY19L2P1Q6NXN4 242 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 GSG1LQ6UXU4 331 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SUN5Q8TC36 379 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TXN2Q99757 166 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 RALYQ9UKM9 306 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SULT1C2O00338 296 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF117Q03924 483 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM71E1Q6IPT2 247 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 FEVQ99581 238 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SULT4A1Q9BR01 284 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 EIF5A2Q9GZV4 153 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 COQ10BQ9H8M1 238 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 MKS1Q9NXB0 559 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 MAST2Q6P0Q8 1798 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 IGHV3OR15-7A0A075B7D8 119 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 DLGAP1O14490 977 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 SYNGR3O43761 229 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 ARAFP10398 606 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 GABRA5P31644 462 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM27E3Q08E93 113 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 AARDQ4LEZ3 155 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 RNFT1Q5M7Z0 435 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 LHX4Q969G2 390 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 WACQ9BTA9 647 aa8.2□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM229AB2RXF0 380 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TXNL1O43396 289 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 PPT1P50897 306 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ARF6P62330 175 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 MMDQ15546 238 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF774Q6NX45 483 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 OLIG3Q7RTU3 272 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 KHSRPQ92945 711 aaKnown RBP eCLIP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 PHOX2BQ99453 314 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 C1QTNF3Q9BXJ4 246 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TXNIPQ9H3M7 391 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEFF2Q9UIK5 374 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 DEFB108AA8MXU0 73 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ATP6V1G2-DDX39BF2Z307 99 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 M0R1X1 148 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TCF21O43680 179 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CSF2RBP32927 897 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 RAB7AP51149 207 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 RPL18Q07020 188 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms