RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 COLCA1Q6ZS62 124 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 ZBTB46Q86UZ6 589 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 PGAM4Q8N0Y7 254 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 OR10AD1Q8NGE0 317 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 OR4K13Q8NH42 304 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 GCDHQ92947 438 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 DVL3Q92997 716 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 MEGF10Q96KG7 1140 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 NSMCE2Q96MF7 247 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF582Q96NG8 517 aaPredicted RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC30A2Q9BRI3 323 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 IFT27Q9BW83 186 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 PLA2G12AQ9BZM1 189 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 RPRD1BQ9NQG5 326 aaKnown RBP13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 CD300AQ9UGN4 299 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 INSIG2Q9Y5U4 225 aa13.93□□□□□ -0.18
CCDC28B-204ENST00000469003 ARPC2O15144 300 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 ATP8B1O43520 1251 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 IDH3BO43837 385 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 FABP3P05413 133 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 CPT2P23786 658 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 RRM2P31350 389 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 ECH1Q13011 328 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 ESCO2Q56NI9 601 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 SLC18B1Q6NT16 456 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 CFAP77Q6ZQR2 320 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 ZDHHC22Q8N966 263 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 C1QTNF5Q9BXJ0 243 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 NTN4Q9HB63 628 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 IL1RAPQ9NPH3 570 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 ESM1Q9NQ30 184 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 TMCC3Q9ULS5 477 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 LRCH1Q9Y2L9 728 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 AUP1Q9Y679 476 aa13.92□□□□□ -0.18
CCDC28B-204ENST00000469003 MEGF8Q7Z7M0 2845 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 MGAM2Q2M2H8 2515 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 A0A1B0GWJ7 208 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 CEACAM18A8MTB9 384 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 H0YL77 283 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 MLNRO43193 412 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ACSM4P0C7M7 580 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 SELEP16581 610 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 NOS3P29474 1203 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 MSX2P35548 267 aaPredicted RBP13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 TSPAN31Q12999 210 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF181Q2M3W8 571 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 TUSC1Q2TAM9 212 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ARMCX4Q5H9R4 360 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF620Q6ZNG0 422 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 CPLX4Q7Z7G2 160 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 LINC00346Q8IVM7 164 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 SDR9C7Q8NEX9 313 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 OR2AJ1Q8NGZ0 328 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ZNF420Q8TAQ5 688 aaPredicted RBP13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 GNPDA2Q8TDQ7 276 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 C22orf15Q8WYQ4 148 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 CDRT15Q96T59 188 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 PITX2Q99697 317 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 ATF6BQ99941 703 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 MRI1Q9BV20 369 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 CDADC1Q9BWV3 514 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 HCAR1Q9BXC0 346 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 CYB5R1Q9UHQ9 305 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 NUP50Q9UKX7 468 aa13.91□□□□□ -0.18
CCDC28B-204ENST00000469003 TENM1Q9UKZ4 2725 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 OR6C68A6NDL8 312 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 F5H5K5 113 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 FSTL3O95633 263 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 CYB5R3P00387 301 aaPredicted RBP13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 WNT2P09544 360 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 GGT2P36268 569 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 UBA52P62987 128 aaKnown RBP13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 DBPQ10586 325 aaPredicted RBP13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 PGBD2Q6P3X8 592 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 ZDHHC21Q8IVQ6 265 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 C3orf56Q8N813 242 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 BHLHE23Q8NDY6 225 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 FN3KQ9H479 309 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 WDR76Q9H967 626 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 TMEM165Q9HC07 324 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 PNRC2Q9NPJ4 139 aaKnown RBP13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 TMEM100Q9NV29 134 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 OR5V1Q9UGF6 321 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 TAGLN3Q9UI15 199 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 KCNG2Q9UJ96 466 aa13.9□□□□□ -0.18
CCDC28B-204ENST00000469003 F5H5P2 479 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 HLA-DQA2P01906 255 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 TRAP1Q12931 704 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 GK2Q14410 553 aaPredicted RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 SPATS1Q496A3 300 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 KLF17Q5JT82 389 aaPredicted RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 RBMS3Q6XE24 437 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 MOGAT3Q86VF5 341 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 C1orf87Q8N0U7 546 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 SIGLECL1Q8N7X8 197 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 OR52E2Q8NGJ4 325 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 ZMYND19Q96E35 227 aaPredicted RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 SSBP3Q9BWW4 388 aaPredicted RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 DDX28Q9NUL7 540 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms