RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PPIL3Q9H2H8 161 aaKnown RBP16.29■□□□□ 0.2
CLN3-206ENST00000360019 TP63Q9H3D4 680 aaPredicted RBP16.29■□□□□ 0.2
CLN3-206ENST00000360019 PLEK2Q9NYT0 353 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 GTF2A1LQ9UNN4 478 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 RTTNQ86VV8 2226 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 USP24Q9UPU5 2620 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 HOXD4P09016 255 aaPredicted RBP16.29■□□□□ 0.2
CLN3-206ENST00000360019 TMIGD3P0DMS9 266 aaPredicted RBP16.29■□□□□ 0.2
CLN3-206ENST00000360019 SFTPCP11686 197 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 HSD11B1P28845 292 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 TIMP3P35625 211 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 SCRN3Q0VDG4 424 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 TAF13Q15543 124 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 ODF4Q2M2E3 257 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 ACSM3Q53FZ2 586 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 SYT9Q86SS6 491 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 STARD4Q96DR4 205 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 KCTD7Q96MP8 289 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 GALNT8Q9NY28 637 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 TINAGQ9UJW2 476 aa16.29■□□□□ 0.2
CLN3-206ENST00000360019 RELNP78509 3460 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 ZNF503-AS2A6NEH8 195 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 TMEM212A6NML5 194 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 LOC110117498-PIK3R3F6TDL0 507 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 ERVH48-1M5A8F1 160 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 SGCEO43556 437 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 CGAP01215 116 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 EDN3P14138 238 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 PRKXP51817 358 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 PSMA6P60900 246 aaKnown RBP16.28■□□□□ 0.2
CLN3-206ENST00000360019 PSG4Q00888 419 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 RSPO1Q2MKA7 263 aaPredicted RBP16.28■□□□□ 0.2
CLN3-206ENST00000360019 ZNF829Q3KNS6 432 aaPredicted RBP16.28■□□□□ 0.2
CLN3-206ENST00000360019 YIF1BQ5BJH7 314 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 FAM27D1Q5T7N8 215 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 ZNF774Q6NX45 483 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 RDH10Q8IZV5 341 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 OR1K1Q8NGR3 316 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 PLSCR4Q9NRQ2 329 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 GSTK1Q9Y2Q3 226 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 TIMM10BQ9Y5J6 103 aa16.28■□□□□ 0.2
CLN3-206ENST00000360019 SHISA3A0PJX4 238 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 SYNGR3O43761 229 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 CNOT4O95628 575 aaKnown RBP16.27■□□□□ 0.2
CLN3-206ENST00000360019 IL2RAP01589 272 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 CRHP06850 196 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 GLI4P10075 376 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 IGHV1-2P23083 117 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 ANOS1P23352 680 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 MAGEB1P43366 347 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 SH3BGRP55822 239 aaPredicted RBP16.27■□□□□ 0.2
CLN3-206ENST00000360019 PCBD1P61457 104 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 GRB2P62993 217 aaKnown RBP16.27■□□□□ 0.2
CLN3-206ENST00000360019 RAB35Q15286 201 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 Q6ZT83 130 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 CEACAM19Q7Z692 300 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 ZNF676Q8N7Q3 588 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 OR10AC1Q8NH08 325 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 AKR7LQ8NHP1 331 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 SLC7A6Q92536 515 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 OR14A2Q96R54 314 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 KCNJ15Q99712 375 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 OR2H1Q9GZK4 316 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 COMMD4Q9H0A8 199 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 WNT5BQ9H1J7 359 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 KCNN2Q9H2S1 579 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 NIPAL2Q9H841 368 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 OR52A1Q9UKL2 312 aa16.27■□□□□ 0.2
CLN3-206ENST00000360019 DOK2O60496 412 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 SERPINA3P01011 423 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 CTSSP25774 331 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 CEACAM8P31997 349 aaPredicted RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 OTX1P32242 354 aaPredicted RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 TUBA1BP68363 451 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 GALK2Q01415 458 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 ZMAT1Q5H9K5 638 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 TUBA1AQ71U36 451 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 OR51A4Q8NGJ6 313 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 ZFP3Q96NJ6 502 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 WACQ9BTA9 647 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 HDHD2Q9H0R4 259 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 BRD7Q9NPI1 651 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 OR6C6A6NF89 314 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 HLA-HP01893 362 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 DBHP09172 617 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 SLC2A1P11166 492 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 CRYGSP22914 178 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 RPS19P39019 145 aaKnown RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 CX3CR1P49238 355 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 EIF2S3LQ2VIR3 472 aaKnown RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 SLC36A2Q495M3 483 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 HIKESHIQ53FT3 197 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 ZNF544Q6NX49 715 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 ANKRD16Q6P6B7 361 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 BCL2L2Q92843 193 aaPredicted RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 OPN3Q9H1Y3 402 aaPredicted RBP16.26■□□□□ 0.19
CLN3-206ENST00000360019 PROCRQ9UNN8 238 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 PMF1-BGLAPU3KQ54 211 aa16.26■□□□□ 0.19
CLN3-206ENST00000360019 TRBV5-5A0A0J9YX44 114 aa16.25■□□□□ 0.19
CLN3-206ENST00000360019 A0A1W2PPK0 400 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms