RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeast

Gene RET3, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RET3	YPL010W	AHC1	Q12433	566 aa		4.82	□□□□□ -1.64
RET3	YPL010W	RPL11A	P0C0W9	174 aa	Known RBP	4.81	□□□□□ -1.64
RET3	YPL010W	APL1	P27351	700 aa		4.81	□□□□□ -1.64
RET3	YPL010W	EUG1	P32474	517 aa		4.81	□□□□□ -1.64
RET3	YPL010W	DUT1	P33317	147 aa		4.81	□□□□□ -1.64
RET3	YPL010W	MNN10	P50108	393 aa	Known RBP	4.81	□□□□□ -1.64
RET3	YPL010W	RPL11B	Q3E757	174 aa	Predicted RBP	4.81	□□□□□ -1.64
RET3	YPL010W	GSC2	P40989	1895 aa		4.8	□□□□□ -1.64
RET3	YPL010W	RPS19A	P07280	144 aa	Known RBP	4.8	□□□□□ -1.64
RET3	YPL010W	RPS19B	P07281	144 aa	Predicted RBP	4.8	□□□□□ -1.64
RET3	YPL010W	SLA2	P33338	968 aa		4.8	□□□□□ -1.64
RET3	YPL010W	TRM2	P33753	639 aa		4.8	□□□□□ -1.64
RET3	YPL010W	LST4	P34239	828 aa		4.8	□□□□□ -1.64
RET3	YPL010W	TOM71	P38825	639 aa	Known RBP	4.8	□□□□□ -1.64
RET3	YPL010W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
RET3	YPL010W	UBX5	Q06682	500 aa		4.8	□□□□□ -1.64
RET3	YPL010W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
RET3	YPL010W	KEL3	Q08979	651 aa	Predicted RBP	4.8	□□□□□ -1.64
RET3	YPL010W	TUS1	Q06412	1307 aa		4.79	□□□□□ -1.64
RET3	YPL010W	FLO1	P32768	1537 aa		4.79	□□□□□ -1.64
RET3	YPL010W	HEM1	P09950	548 aa	Predicted RBP	4.79	□□□□□ -1.64
RET3	YPL010W	LYP1	P32487	611 aa		4.79	□□□□□ -1.64
RET3	YPL010W	RGT1	P32862	1170 aa		4.79	□□□□□ -1.64
RET3	YPL010W	YKR018C	P36114	725 aa		4.79	□□□□□ -1.64
RET3	YPL010W	BRE5	P53741	515 aa	Known RBP	4.79	□□□□□ -1.64
RET3	YPL010W	CSI1	Q04368	295 aa		4.79	□□□□□ -1.64
RET3	YPL010W	HMI1	Q12039	706 aa		4.79	□□□□□ -1.64
RET3	YPL010W	BI4	P03879	638 aa		4.78	□□□□□ -1.64
RET3	YPL010W	DBP2	P24783	546 aa	Known RBP	4.78	□□□□□ -1.64
RET3	YPL010W	MNR2	P35724	969 aa		4.78	□□□□□ -1.64
RET3	YPL010W	KSP1	P38691	1029 aa	Known RBP	4.78	□□□□□ -1.64
RET3	YPL010W	YNL193W	P53870	558 aa		4.78	□□□□□ -1.64
RET3	YPL010W	NOP12	Q08208	459 aa	Known RBP	4.78	□□□□□ -1.64
RET3	YPL010W	PUS9	Q12069	462 aa		4.78	□□□□□ -1.64
RET3	YPL010W	RPP0	P05317	312 aa	Known RBP	4.77	□□□□□ -1.65
RET3	YPL010W	CDC34	P14682	295 aa		4.77	□□□□□ -1.65
RET3	YPL010W	PRE8	P23639	250 aa		4.77	□□□□□ -1.65
RET3	YPL010W	SRP40	P32583	406 aa	Predicted RBP	4.77	□□□□□ -1.65
RET3	YPL010W	PEP7	P32609	515 aa		4.77	□□□□□ -1.65
RET3	YPL010W	MCM7	P38132	845 aa		4.77	□□□□□ -1.65
RET3	YPL010W	AFG3	P39925	761 aa		4.77	□□□□□ -1.65
RET3	YPL010W	TIF4631	P39935	952 aa	Known RBP	4.77	□□□□□ -1.65
RET3	YPL010W	SOL4	P53315	255 aa		4.77	□□□□□ -1.65
RET3	YPL010W	YLR224W	Q05947	369 aa		4.77	□□□□□ -1.65
RET3	YPL010W	PNS1	Q12412	539 aa		4.77	□□□□□ -1.65
RET3	YPL010W	RKM4	Q12504	494 aa		4.77	□□□□□ -1.65
RET3	YPL010W	NCB2	Q92317	146 aa		4.77	□□□□□ -1.65
RET3	YPL010W	TRP2	P00899	507 aa	Known RBP	4.76	□□□□□ -1.65
RET3	YPL010W	KRS1	P15180	591 aa	Known RBP	4.76	□□□□□ -1.65
RET3	YPL010W	DCG1	P32460	244 aa		4.76	□□□□□ -1.65
RET3	YPL010W	MND2	P40577	368 aa		4.76	□□□□□ -1.65
RET3	YPL010W	HFM1	P51979	1187 aa		4.76	□□□□□ -1.65
RET3	YPL010W	EEB1	Q02891	456 aa		4.76	□□□□□ -1.65
RET3	YPL010W	YML037C	Q03703	340 aa		4.76	□□□□□ -1.65
RET3	YPL010W	RPN7	Q06103	429 aa	Known RBP	4.76	□□□□□ -1.65
RET3	YPL010W	ADY3	Q07732	790 aa		4.76	□□□□□ -1.65
RET3	YPL010W	YLL058W	Q12198	575 aa		4.76	□□□□□ -1.65
RET3	YPL010W	NTO1	Q12311	748 aa		4.76	□□□□□ -1.65
RET3	YPL010W	HIP1	P06775	603 aa		4.75	□□□□□ -1.65
RET3	YPL010W	HCM1	P25364	564 aa		4.75	□□□□□ -1.65
RET3	YPL010W	EMC1	P25574	760 aa		4.75	□□□□□ -1.65
RET3	YPL010W	PMI40	P29952	429 aa	Known RBP	4.75	□□□□□ -1.65
RET3	YPL010W	GRX7	P38068	203 aa		4.75	□□□□□ -1.65
RET3	YPL010W	NOC2	P39744	710 aa	Known RBP	4.75	□□□□□ -1.65
RET3	YPL010W	IOC3	P43596	787 aa		4.75	□□□□□ -1.65
RET3	YPL010W	MCM6	P53091	1017 aa	Known RBP	4.75	□□□□□ -1.65
RET3	YPL010W	YGR125W	P53273	1036 aa		4.75	□□□□□ -1.65
RET3	YPL010W	ALD6	P54115	500 aa	Known RBP	4.75	□□□□□ -1.65
RET3	YPL010W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
RET3	YPL010W	BUL2	Q03758	920 aa	Known RBP	4.75	□□□□□ -1.65
RET3	YPL010W	GIS1	Q03833	894 aa		4.75	□□□□□ -1.65
RET3	YPL010W	YAP6	Q03935	383 aa		4.75	□□□□□ -1.65
RET3	YPL010W	TMA10	Q06177	86 aa		4.75	□□□□□ -1.65
RET3	YPL010W	SPP382	Q06411	708 aa	Predicted RBP	4.75	□□□□□ -1.65
RET3	YPL010W	RPP2A	P05319	106 aa	Known RBP	4.74	□□□□□ -1.65
RET3	YPL010W	SUI2	P20459	304 aa	Known RBP	4.74	□□□□□ -1.65
RET3	YPL010W	YNG2	P38806	282 aa	Known RBP	4.74	□□□□□ -1.65
RET3	YPL010W	VPS27	P40343	622 aa	Known RBP	4.74	□□□□□ -1.65
RET3	YPL010W	MET12	P46151	657 aa		4.74	□□□□□ -1.65
RET3	YPL010W	ENP2	P48234	707 aa	Known RBP	4.74	□□□□□ -1.65
RET3	YPL010W	MSE1	P48525	536 aa		4.74	□□□□□ -1.65
RET3	YPL010W	TYW3	P53177	273 aa		4.74	□□□□□ -1.65
RET3	YPL010W	BCS1	P32839	456 aa		4.73	□□□□□ -1.65
RET3	YPL010W	PET112	P33893	541 aa		4.73	□□□□□ -1.65
RET3	YPL010W	SNF7	P39929	240 aa	Known RBP	4.73	□□□□□ -1.65
RET3	YPL010W	JHD1	P40034	492 aa		4.73	□□□□□ -1.65
RET3	YPL010W	SKP2	P42843	763 aa		4.73	□□□□□ -1.65
RET3	YPL010W	CHA4	P43634	648 aa		4.73	□□□□□ -1.65
RET3	YPL010W	OYE2	Q03558	400 aa	Known RBP	4.73	□□□□□ -1.65
RET3	YPL010W	TPO1	Q07824	586 aa		4.73	□□□□□ -1.65
RET3	YPL010W	YPL066W	Q12194	479 aa		4.73	□□□□□ -1.65
RET3	YPL010W	HIS5	P07172	385 aa		4.72	□□□□□ -1.65
RET3	YPL010W	RAD18	P10862	487 aa		4.72	□□□□□ -1.65
RET3	YPL010W	INO1	P11986	533 aa		4.72	□□□□□ -1.65
RET3	YPL010W	MCM4	P30665	933 aa	Known RBP	4.72	□□□□□ -1.65
RET3	YPL010W	UTR4	P32626	227 aa		4.72	□□□□□ -1.65
RET3	YPL010W	TIM23	P32897	222 aa		4.72	□□□□□ -1.65
RET3	YPL010W	YHR131C	P38835	850 aa		4.72	□□□□□ -1.65
RET3	YPL010W	YAP1801	P38856	637 aa		4.72	□□□□□ -1.65
RET3	YPL010W	FPR3	P38911	411 aa	Known RBP	4.72	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms