RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W ATG19P35193 415 aa6.72□□□□□ -1.33
PRP40YKL012W MIP6P38760 659 aaKnown RBP6.72□□□□□ -1.33
PRP40YKL012W SSY5P47002 699 aa6.72□□□□□ -1.33
PRP40YKL012W ATP12P22135 325 aa6.71□□□□□ -1.34
PRP40YKL012W KTR4P38131 464 aa6.71□□□□□ -1.34
PRP40YKL012W CTF8P38877 133 aa6.71□□□□□ -1.34
PRP40YKL012W MND2P40577 368 aa6.71□□□□□ -1.34
PRP40YKL012W FOL2P51601 243 aaKnown RBP6.71□□□□□ -1.34
PRP40YKL012W BRE5P53741 515 aaKnown RBP6.71□□□□□ -1.34
PRP40YKL012W GPD1Q00055 391 aaKnown RBP6.71□□□□□ -1.34
PRP40YKL012W PSR2Q07949 397 aa6.71□□□□□ -1.34
PRP40YKL012W LPX1Q12405 387 aaKnown RBP6.71□□□□□ -1.34
PRP40YKL012W SPE1P08432 466 aa6.7□□□□□ -1.34
PRP40YKL012W MSS18P08593 268 aa6.7□□□□□ -1.34
PRP40YKL012W CMP2P14747 604 aa6.7□□□□□ -1.34
PRP40YKL012W BEM4P39011 633 aa6.7□□□□□ -1.34
PRP40YKL012W APA1P16550 321 aaKnown RBP6.69□□□□□ -1.34
PRP40YKL012W KAE1P36132 386 aa6.69□□□□□ -1.34
PRP40YKL012W YKR075CP36155 307 aa6.69□□□□□ -1.34
PRP40YKL012W SDP1P40479 209 aa6.69□□□□□ -1.34
PRP40YKL012W QRI7P43122 407 aa6.69□□□□□ -1.34
PRP40YKL012W YPL034WQ03083 165 aa6.69□□□□□ -1.34
PRP40YKL012W YPR053CQ6Q5F3 151 aa6.69□□□□□ -1.34
PRP40YKL012W YHR078WP38799 552 aa6.69□□□□□ -1.34
PRP40YKL012W SKN7P38889 622 aa6.69□□□□□ -1.34
PRP40YKL012W ACA1P39970 489 aa6.69□□□□□ -1.34
PRP40YKL012W MCA1Q08601 432 aa6.69□□□□□ -1.34
PRP40YKL012W CYC1P00044 109 aaPredicted RBP6.68□□□□□ -1.34
PRP40YKL012W HOP1P20050 605 aa6.68□□□□□ -1.34
PRP40YKL012W DBF20P32328 564 aa6.68□□□□□ -1.34
PRP40YKL012W AKL1P38080 1108 aaKnown RBP6.68□□□□□ -1.34
PRP40YKL012W HOL1P53389 586 aa6.68□□□□□ -1.34
PRP40YKL012W NOP15P53927 220 aaPredicted RBP6.68□□□□□ -1.34
PRP40YKL012W ORC3P54790 616 aa6.68□□□□□ -1.34
PRP40YKL012W LEE1Q02799 301 aaKnown RBP6.68□□□□□ -1.34
PRP40YKL012W GLN4P13188 809 aaKnown RBP6.67□□□□□ -1.34
PRP40YKL012W MTR3P48240 250 aaPredicted RBP6.67□□□□□ -1.34
PRP40YKL012W YGR130CP53278 816 aa6.67□□□□□ -1.34
PRP40YKL012W YLR407WQ06070 228 aa6.67□□□□□ -1.34
PRP40YKL012W YOL114CQ12322 202 aa6.67□□□□□ -1.34
PRP40YKL012W GPR1Q12361 961 aa6.67□□□□□ -1.34
PRP40YKL012W GAL10P04397 699 aa6.67□□□□□ -1.34
PRP40YKL012W EXO84P38261 753 aa6.67□□□□□ -1.34
PRP40YKL012W YHR202WP38887 602 aa6.67□□□□□ -1.34
PRP40YKL012W VID27P40157 782 aa6.67□□□□□ -1.34
PRP40YKL012W ORC4P54791 529 aa6.67□□□□□ -1.34
PRP40YKL012W CEG1Q01159 459 aaPredicted RBP6.67□□□□□ -1.34
PRP40YKL012W CDC26P14724 124 aa6.66□□□□□ -1.34
PRP40YKL012W VID28P40547 921 aa6.66□□□□□ -1.34
PRP40YKL012W URM1P40554 99 aaPredicted RBP6.66□□□□□ -1.34
PRP40YKL012W SAP185P40856 1058 aa6.66□□□□□ -1.34
PRP40YKL012W WHI4Q07655 649 aaKnown RBP6.66□□□□□ -1.34
PRP40YKL012W CYC7P00045 113 aa6.65□□□□□ -1.34
PRP40YKL012W PHO81P17442 1178 aa6.65□□□□□ -1.34
PRP40YKL012W SRP68P38687 599 aaKnown RBP6.65□□□□□ -1.34
PRP40YKL012W SAK1P38990 1142 aa6.65□□□□□ -1.34
PRP40YKL012W PZF1P39933 429 aa6.65□□□□□ -1.34
PRP40YKL012W SET2P46995 733 aaKnown RBP6.65□□□□□ -1.34
PRP40YKL012W ASM4Q05166 528 aa6.65□□□□□ -1.34
PRP40YKL012W OMS1Q06668 471 aa6.65□□□□□ -1.34
PRP40YKL012W ADY3Q07732 790 aa6.65□□□□□ -1.34
PRP40YKL012W TPO1Q07824 586 aa6.65□□□□□ -1.34
PRP40YKL012W PET309P32522 965 aaPredicted RBP6.64□□□□□ -1.35
PRP40YKL012W ASK10P48361 1146 aa6.64□□□□□ -1.35
PRP40YKL012W YMR210WQ03649 449 aa6.64□□□□□ -1.35
PRP40YKL012W BRE1Q07457 700 aaKnown RBP6.64□□□□□ -1.35
PRP40YKL012W NGL1Q08213 363 aaKnown RBP6.64□□□□□ -1.35
PRP40YKL012W CWC2Q12046 339 aaPredicted RBP6.64□□□□□ -1.35
PRP40YKL012W UPC2Q12151 913 aa6.64□□□□□ -1.35
PRP40YKL012W SSH4P32343 579 aa6.64□□□□□ -1.35
PRP40YKL012W YIL092WP40497 633 aa6.64□□□□□ -1.35
PRP40YKL012W IES1P43579 692 aa6.64□□□□□ -1.35
PRP40YKL012W IRC5P43610 853 aa6.64□□□□□ -1.35
PRP40YKL012W MUS81Q04149 632 aaPredicted RBP6.64□□□□□ -1.35
PRP40YKL012W RPS17AP02407 136 aaKnown RBP6.63□□□□□ -1.35
PRP40YKL012W RPP2AP05319 106 aaKnown RBP6.63□□□□□ -1.35
PRP40YKL012W RPS17BP14127 136 aaKnown RBP6.63□□□□□ -1.35
PRP40YKL012W HXT4P32467 576 aa6.63□□□□□ -1.35
PRP40YKL012W STE14P32584 239 aa6.63□□□□□ -1.35
PRP40YKL012W APN2P38207 520 aa6.63□□□□□ -1.35
PRP40YKL012W ERP2P39704 215 aa6.63□□□□□ -1.35
PRP40YKL012W EAF5P39995 279 aa6.63□□□□□ -1.35
PRP40YKL012W PFA3P42836 336 aa6.63□□□□□ -1.35
PRP40YKL012W MET12P46151 657 aa6.63□□□□□ -1.35
PRP40YKL012W NUR1Q12066 484 aa6.63□□□□□ -1.35
PRP40YKL012W SED4P25365 1065 aa6.62□□□□□ -1.35
PRP40YKL012W IMG2P25642 146 aaPredicted RBP6.62□□□□□ -1.35
PRP40YKL012W MF(ALPHA)2P32435 120 aa6.62□□□□□ -1.35
PRP40YKL012W SAW1P39735 261 aa6.62□□□□□ -1.35
PRP40YKL012W GID8P40208 455 aa6.62□□□□□ -1.35
PRP40YKL012W RPT2P40327 437 aaKnown RBP6.62□□□□□ -1.35
PRP40YKL012W PUS4P48567 403 aaKnown RBP6.62□□□□□ -1.35
PRP40YKL012W TEP1P53916 434 aa6.62□□□□□ -1.35
PRP40YKL012W YML131WQ03102 365 aa6.62□□□□□ -1.35
PRP40YKL012W HLR1Q04429 423 aa6.62□□□□□ -1.35
PRP40YKL012W PHO3P24031 467 aa6.62□□□□□ -1.35
PRP40YKL012W STL1P39932 569 aa6.62□□□□□ -1.35
PRP40YKL012W ASI2P53895 289 aa6.62□□□□□ -1.35
PRP40YKL012W MTD1Q02046 320 aaKnown RBP6.62□□□□□ -1.35
PRP40YKL012W ACO1P19414 778 aaKnown RBP RIP-Chip data6.61□□□□□ -1.35not detected
Retrieved 100 of 5,963 RNA–protein pairs in 59.5 ms