RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W PCL5P38794 229 aa5.72□□□□□ -1.49
SEC28YIL076W RPN10P38886 268 aaKnown RBP5.72□□□□□ -1.49
SEC28YIL076W QRI1P43123 477 aaKnown RBP5.72□□□□□ -1.49
SEC28YIL076W BNA2P47125 453 aa5.72□□□□□ -1.49
SEC28YIL076W PRP31P49704 494 aaPredicted RBP5.72□□□□□ -1.49
SEC28YIL076W ATG11Q12527 1178 aa5.72□□□□□ -1.49
SEC28YIL076W CIT2P08679 460 aa5.71□□□□□ -1.5
SEC28YIL076W CAF16P43569 289 aa5.71□□□□□ -1.5
SEC28YIL076W NPY1P53164 384 aa5.71□□□□□ -1.5
SEC28YIL076W RIA1P53893 1110 aa5.71□□□□□ -1.5
SEC28YIL076W SNP1Q00916 300 aaPredicted RBP5.71□□□□□ -1.5
SEC28YIL076W THI4P32318 326 aa5.7□□□□□ -1.5
SEC28YIL076W ECM1P39715 212 aa5.7□□□□□ -1.5
SEC28YIL076W SRD1P09007 221 aa5.69□□□□□ -1.5
SEC28YIL076W ADE2P21264 571 aaKnown RBP5.69□□□□□ -1.5
SEC28YIL076W MSH2P25847 964 aa5.69□□□□□ -1.5
SEC28YIL076W FMP52P40008 231 aa5.69□□□□□ -1.5
SEC28YIL076W UBC11P52492 156 aa5.69□□□□□ -1.5
SEC28YIL076W ORC4P54791 529 aa5.69□□□□□ -1.5
SEC28YIL076W SGO1Q08490 590 aa5.69□□□□□ -1.5
SEC28YIL076W MRH1Q12117 320 aaPredicted RBP5.69□□□□□ -1.5
SEC28YIL076W MIH1P23748 554 aa5.68□□□□□ -1.5
SEC28YIL076W YKR051WP36142 418 aa5.68□□□□□ -1.5
SEC28YIL076W BAP3P41815 604 aa5.68□□□□□ -1.5
SEC28YIL076W YHR112CP38716 378 aa5.67□□□□□ -1.5
SEC28YIL076W TEL2P53038 688 aa5.67□□□□□ -1.5
SEC28YIL076W MTL1P53214 551 aa5.67□□□□□ -1.5
SEC28YIL076W NHX1Q04121 633 aa5.67□□□□□ -1.5
SEC28YIL076W RPN7Q06103 429 aaKnown RBP5.67□□□□□ -1.5
SEC28YIL076W YTA7P40340 1379 aa5.67□□□□□ -1.5
SEC28YIL076W HIR1P32479 840 aa5.66□□□□□ -1.5
SEC28YIL076W HOG1P32485 435 aa5.66□□□□□ -1.5
SEC28YIL076W PEX6P33760 1030 aa5.66□□□□□ -1.5
SEC28YIL076W APL2P36000 726 aaPredicted RBP5.66□□□□□ -1.5
SEC28YIL076W MIP6P38760 659 aaKnown RBP5.66□□□□□ -1.5
SEC28YIL076W ARG5,6Q01217 863 aa5.66□□□□□ -1.5
SEC28YIL076W RAD18P10862 487 aa5.65□□□□□ -1.5
SEC28YIL076W APT2P36973 181 aa5.65□□□□□ -1.5
SEC28YIL076W HSL7P38274 827 aa5.65□□□□□ -1.5
SEC28YIL076W CBR1P38626 284 aaKnown RBP5.65□□□□□ -1.5
SEC28YIL076W LYS9P38999 446 aa5.65□□□□□ -1.5
SEC28YIL076W CCT3P39077 534 aaKnown RBP5.65□□□□□ -1.5
SEC28YIL076W OSW7P43611 510 aa5.65□□□□□ -1.5
SEC28YIL076W SSL2Q00578 843 aa5.65□□□□□ -1.5
SEC28YIL076W UGO1Q03327 502 aa5.65□□□□□ -1.5
SEC28YIL076W FMO1P38866 432 aa5.64□□□□□ -1.51
SEC28YIL076W UBC9P50623 157 aaPredicted RBP5.64□□□□□ -1.51
SEC28YIL076W CTK1Q03957 528 aaKnown RBP5.64□□□□□ -1.51
SEC28YIL076W MCM21Q06675 368 aa5.64□□□□□ -1.51
SEC28YIL076W MVD1P32377 396 aaKnown RBP5.63□□□□□ -1.51
SEC28YIL076W YKR018CP36114 725 aa5.63□□□□□ -1.51
SEC28YIL076W TRZ1P36159 838 aaPredicted RBP5.63□□□□□ -1.51
SEC28YIL076W REV7P38927 245 aa5.63□□□□□ -1.51
SEC28YIL076W POB3Q04636 552 aaKnown RBP5.63□□□□□ -1.51
SEC28YIL076W NTG2Q08214 380 aa5.63□□□□□ -1.51
SEC28YIL076W MSL5Q12186 476 aaKnown RBP RIP-Chip data5.63□□□□□ -1.51not detected
SEC28YIL076W KIN3P22209 435 aa5.62□□□□□ -1.51
SEC28YIL076W ERG6P25087 383 aaKnown RBP5.62□□□□□ -1.51
SEC28YIL076W TDP1P38319 544 aa5.62□□□□□ -1.51
SEC28YIL076W DOT6P40059 670 aaKnown RBP5.62□□□□□ -1.51
SEC28YIL076W PAN2P53010 1115 aaPredicted RBP5.62□□□□□ -1.51
SEC28YIL076W PCL10P53124 433 aa5.62□□□□□ -1.51
SEC28YIL076W YKL033W-AQ86ZR7 236 aa5.62□□□□□ -1.51
SEC28YIL076W HRP1Q99383 534 aaKnown RBP5.62□□□□□ -1.51
SEC28YIL076W SIR3P06701 978 aa5.61□□□□□ -1.51
SEC28YIL076W YPT53P36019 220 aa5.61□□□□□ -1.51
SEC28YIL076W SFB3P38810 929 aa5.61□□□□□ -1.51
SEC28YIL076W HRB1P38922 454 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
SEC28YIL076W NUP60P39705 539 aa5.61□□□□□ -1.51
SEC28YIL076W YAP1802P53309 568 aa5.61□□□□□ -1.51
SEC28YIL076W SMX3P54999 86 aaPredicted RBP5.61□□□□□ -1.51
SEC28YIL076W ARP4P80428 489 aa5.61□□□□□ -1.51
SEC28YIL076W RGC1Q06108 1083 aaKnown RBP5.61□□□□□ -1.51
SEC28YIL076W SUT2Q12286 268 aa5.61□□□□□ -1.51
SEC28YIL076W MET6P05694 767 aaKnown RBP5.6□□□□□ -1.51
SEC28YIL076W HMG1P12683 1054 aa5.6□□□□□ -1.51
SEC28YIL076W CDC43P18898 376 aa5.6□□□□□ -1.51
SEC28YIL076W PCL2P25693 308 aa5.6□□□□□ -1.51
SEC28YIL076W AIM14P53109 570 aa5.6□□□□□ -1.51
SEC28YIL076W HMO1Q03973 246 aaKnown RBP5.6□□□□□ -1.51
SEC28YIL076W FPR4Q06205 392 aaPredicted RBP5.6□□□□□ -1.51
SEC28YIL076W PYC1P11154 1178 aaKnown RBP5.59□□□□□ -1.51
SEC28YIL076W GFA1P14742 717 aaKnown RBP5.59□□□□□ -1.51
SEC28YIL076W RNR1P21524 888 aaKnown RBP5.59□□□□□ -1.51
SEC28YIL076W GET2P40056 285 aa5.59□□□□□ -1.51
SEC28YIL076W ATF1P40353 525 aa5.59□□□□□ -1.51
SEC28YIL076W VPS73P53142 486 aaKnown RBP5.59□□□□□ -1.51
SEC28YIL076W REC102Q02721 264 aa5.59□□□□□ -1.51
SEC28YIL076W ATG33Q06485 197 aa5.59□□□□□ -1.51
SEC28YIL076W GID8P40208 455 aa5.58□□□□□ -1.52
SEC28YIL076W LEE1Q02799 301 aaKnown RBP5.58□□□□□ -1.52
SEC28YIL076W YML122CQ03207 126 aa5.58□□□□□ -1.52
SEC28YIL076W YEL1P34225 687 aa5.57□□□□□ -1.52
SEC28YIL076W PHO11P35842 467 aa5.57□□□□□ -1.52
SEC28YIL076W PCM1P38628 557 aaKnown RBP5.57□□□□□ -1.52
SEC28YIL076W PHO12P38693 467 aa5.57□□□□□ -1.52
SEC28YIL076W YJL206CP39529 758 aa5.57□□□□□ -1.52
SEC28YIL076W NDC80P40460 691 aa5.57□□□□□ -1.52
SEC28YIL076W TAH11P47112 604 aa5.57□□□□□ -1.52
SEC28YIL076W COX18P53239 316 aa5.57□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 50.7 ms