RNA–Protein interactions for RNA: YHL006C

SHU1, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU1YHL006C SMC3P47037 1230 aa14.31□□□□□ -0.12
SHU1YHL006C IWR1Q07532 353 aaPredicted RBP14.31□□□□□ -0.12
SHU1YHL006C ABP140Q08641 628 aaKnown RBP14.31□□□□□ -0.12
SHU1YHL006C KEX1P09620 729 aa14.3□□□□□ -0.12
SHU1YHL006C CDC42P19073 191 aa14.3□□□□□ -0.12
SHU1YHL006C RRT12P25381 491 aa14.3□□□□□ -0.12
SHU1YHL006C BFA1P47113 574 aa14.3□□□□□ -0.12
SHU1YHL006C FAB1P34756 2278 aa14.3□□□□□ -0.12
SHU1YHL006C YBR056WP38081 501 aa14.29□□□□□ -0.12
SHU1YHL006C RGD1P38339 666 aa14.29□□□□□ -0.12
SHU1YHL006C AIP1P46680 615 aaKnown RBP14.29□□□□□ -0.12
SHU1YHL006C RPA49Q01080 415 aaPredicted RBP14.29□□□□□ -0.12
SHU1YHL006C LEE1Q02799 301 aaKnown RBP14.29□□□□□ -0.12
SHU1YHL006C CBF2P32504 956 aa14.28□□□□□ -0.12
SHU1YHL006C LEO1P38439 464 aa14.28□□□□□ -0.12
SHU1YHL006C SAH1P39954 449 aaKnown RBP14.28□□□□□ -0.12
SHU1YHL006C KAP123P40069 1113 aaKnown RBP14.28□□□□□ -0.12
SHU1YHL006C TGL3P40308 642 aa14.28□□□□□ -0.12
SHU1YHL006C GIR2Q03768 265 aaPredicted RBP14.28□□□□□ -0.12
SHU1YHL006C TRS33Q99394 268 aa14.28□□□□□ -0.12
SHU1YHL006C GAL10P04397 699 aa14.27□□□□□ -0.13
SHU1YHL006C SCJ1P25303 377 aa14.27□□□□□ -0.13
SHU1YHL006C SHE3P38272 425 aaKnown RBP14.27□□□□□ -0.13
SHU1YHL006C KIC1P38692 1080 aa14.27□□□□□ -0.13
SHU1YHL006C FIG4P42837 879 aa14.27□□□□□ -0.13
SHU1YHL006C LSB6P42951 607 aa14.27□□□□□ -0.13
SHU1YHL006C ZAP1P47043 880 aa14.27□□□□□ -0.13
SHU1YHL006C BIO5P53744 561 aaKnown RBP14.27□□□□□ -0.13
SHU1YHL006C MUB1Q03162 620 aa14.27□□□□□ -0.13
SHU1YHL006C HER2Q03557 464 aa14.27□□□□□ -0.13
SHU1YHL006C NSE5Q03718 556 aa14.27□□□□□ -0.13
SHU1YHL006C RNR1P21524 888 aaKnown RBP14.26□□□□□ -0.13
SHU1YHL006C GAC1P28006 793 aa14.26□□□□□ -0.13
SHU1YHL006C CDC11P32458 415 aa14.26□□□□□ -0.13
SHU1YHL006C FRE1P32791 686 aa14.26□□□□□ -0.13
SHU1YHL006C CPR7P47103 393 aa14.26□□□□□ -0.13
SHU1YHL006C VPS25P47142 202 aa14.26□□□□□ -0.13
SHU1YHL006C YNL011CP53980 444 aa14.26□□□□□ -0.13
SHU1YHL006C PRM6Q04705 352 aa14.26□□□□□ -0.13
SHU1YHL006C COG4Q06096 861 aa14.26□□□□□ -0.13
SHU1YHL006C YAP7Q08182 245 aa14.26□□□□□ -0.13
SHU1YHL006C GPM2Q12008 311 aa14.26□□□□□ -0.13
SHU1YHL006C TAF10Q12030 206 aa14.26□□□□□ -0.13
SHU1YHL006C SPE3Q12074 293 aaKnown RBP14.26□□□□□ -0.13
SHU1YHL006C YDL206WQ12424 762 aa14.26□□□□□ -0.13
SHU1YHL006C SIS1P25294 352 aaKnown RBP14.25□□□□□ -0.13
SHU1YHL006C TKL2P33315 681 aa14.25□□□□□ -0.13
SHU1YHL006C VPS24P36095 224 aaKnown RBP14.25□□□□□ -0.13
SHU1YHL006C YKL023WP36103 277 aaKnown RBP14.25□□□□□ -0.13
SHU1YHL006C ARP1P38696 384 aa14.25□□□□□ -0.13
SHU1YHL006C SFB3P38810 929 aa14.25□□□□□ -0.13
SHU1YHL006C COX11P19516 300 aaKnown RBP14.24□□□□□ -0.13
SHU1YHL006C EFB1P32471 206 aaKnown RBP14.24□□□□□ -0.13
SHU1YHL006C KDX1P36005 433 aa14.24□□□□□ -0.13
SHU1YHL006C EBS1Q03466 884 aaKnown RBP14.24□□□□□ -0.13
SHU1YHL006C WAR1Q03631 944 aa14.24□□□□□ -0.13
SHU1YHL006C PPM1Q04081 328 aa14.24□□□□□ -0.13
SHU1YHL006C DUG2P38149 878 aa14.23□□□□□ -0.13
SHU1YHL006C GEM1P39722 662 aa14.23□□□□□ -0.13
SHU1YHL006C UBP3Q01477 912 aaKnown RBP RIP-Chip data14.23□□□□□ -0.13not detected
SHU1YHL006C HAP5Q02516 242 aa14.23□□□□□ -0.13
SHU1YHL006C STE20Q03497 939 aaKnown RBP14.23□□□□□ -0.13
SHU1YHL006C SGF29P25554 259 aa14.22□□□□□ -0.13
SHU1YHL006C GSY2P27472 705 aa14.22□□□□□ -0.13
SHU1YHL006C CDC27P38042 758 aa14.22□□□□□ -0.13
SHU1YHL006C UTP8P53276 713 aaKnown RBP14.22□□□□□ -0.13
SHU1YHL006C TSR1Q07381 788 aaKnown RBP14.22□□□□□ -0.13
SHU1YHL006C ETT1Q08421 412 aaKnown RBP14.22□□□□□ -0.13
SHU1YHL006C YPQ1Q12010 308 aa14.22□□□□□ -0.13
SHU1YHL006C MRC1P25588 1096 aa14.21□□□□□ -0.13
SHU1YHL006C RAD16P31244 790 aa14.21□□□□□ -0.13
SHU1YHL006C MET4P32389 672 aa14.21□□□□□ -0.13
SHU1YHL006C ISF1P32488 338 aa14.21□□□□□ -0.13
SHU1YHL006C RPC25P35718 212 aa14.21□□□□□ -0.13
SHU1YHL006C YKR051WP36142 418 aa14.21□□□□□ -0.13
SHU1YHL006C CTM1P38818 585 aa14.21□□□□□ -0.13
SHU1YHL006C DSE1P40077 573 aa14.21□□□□□ -0.13
SHU1YHL006C DJP1P40564 432 aa14.21□□□□□ -0.13
SHU1YHL006C SBE2P42223 864 aaKnown RBP14.21□□□□□ -0.13
SHU1YHL006C YJR054WP47114 497 aa14.21□□□□□ -0.13
SHU1YHL006C PSP1P50896 841 aaKnown RBP14.21□□□□□ -0.13
SHU1YHL006C MZM1Q03429 123 aaPredicted RBP14.21□□□□□ -0.13
SHU1YHL006C YHM2Q04013 314 aa14.21□□□□□ -0.13
SHU1YHL006C AIM44Q99299 758 aa14.21□□□□□ -0.13
SHU1YHL006C HIS5P07172 385 aa14.2□□□□□ -0.14
SHU1YHL006C COS5P47187 383 aa14.2□□□□□ -0.14
SHU1YHL006C SFB2P53953 876 aa14.2□□□□□ -0.14
SHU1YHL006C YLR297WQ05899 129 aa14.2□□□□□ -0.14
SHU1YHL006C SAM3Q08986 587 aa14.2□□□□□ -0.14
SHU1YHL006C ECM3Q99252 613 aa14.2□□□□□ -0.14
SHU1YHL006C CDC37P06101 506 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C RPS14AP06367 137 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C SAT4P25333 603 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C TSA1P34760 196 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C ADE17P38009 592 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C RPS14BP39516 138 aaKnown RBP14.19□□□□□ -0.14
SHU1YHL006C BSP1Q06604 576 aa14.19□□□□□ -0.14
SHU1YHL006C SPO75Q07798 868 aa14.19□□□□□ -0.14
SHU1YHL006C SIR1P21691 654 aa14.18□□□□□ -0.14
SHU1YHL006C STE11P23561 717 aa14.18□□□□□ -0.14
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms