RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C ABD1P32783 436 aaPredicted RBP4.06□□□□□ -1.76
CDC40YDR364C HUL4P40985 892 aa4.06□□□□□ -1.76
CDC40YDR364C HLJ1P48353 224 aa4.06□□□□□ -1.76
CDC40YDR364C PSP2P50109 593 aaKnown RBP4.06□□□□□ -1.76
CDC40YDR364C FOL1P53848 824 aa4.06□□□□□ -1.76
CDC40YDR364C EEB1Q02891 456 aa4.06□□□□□ -1.76
CDC40YDR364C SPO20Q04359 397 aa4.06□□□□□ -1.76
CDC40YDR364C TRP4P07285 380 aaPredicted RBP4.05□□□□□ -1.76
CDC40YDR364C RPL8BP29453 256 aaKnown RBP4.05□□□□□ -1.76
CDC40YDR364C STE5P32917 917 aa4.05□□□□□ -1.76
CDC40YDR364C MRP8P35719 219 aa4.05□□□□□ -1.76
CDC40YDR364C YKL151CP36059 337 aa4.05□□□□□ -1.76
CDC40YDR364C ECM21P38167 1117 aaKnown RBP4.05□□□□□ -1.76
CDC40YDR364C CCC2P38995 1004 aa4.05□□□□□ -1.76
CDC40YDR364C NAB3P38996 802 aaKnown RBP RIP-Chip data4.05□□□□□ -1.76not detected
CDC40YDR364C ERP6P53198 216 aa4.05□□□□□ -1.76
CDC40YDR364C TIM44Q01852 431 aa4.05□□□□□ -1.76
CDC40YDR364C NDJ1Q12366 352 aa4.05□□□□□ -1.76
CDC40YDR364C LEU2P04173 364 aaPredicted RBP4.04□□□□□ -1.76
CDC40YDR364C KAR1P11927 433 aa4.04□□□□□ -1.76
CDC40YDR364C SEC6P32844 805 aa4.04□□□□□ -1.76
CDC40YDR364C ZDS1P50111 915 aaKnown RBP4.04□□□□□ -1.76
CDC40YDR364C YRB30P53107 440 aaPredicted RBP4.04□□□□□ -1.76
CDC40YDR364C NAB6Q03735 1134 aaKnown RBP RIP-Chip data4.04□□□□□ -1.76not detected
CDC40YDR364C ESC2Q06340 456 aa4.04□□□□□ -1.76
CDC40YDR364C FMP25Q08023 583 aa4.04□□□□□ -1.76
CDC40YDR364C MDM38Q08179 573 aa4.04□□□□□ -1.76
CDC40YDR364C NTG2Q08214 380 aa4.04□□□□□ -1.76
CDC40YDR364C ADE6P38972 1358 aaKnown RBP4.04□□□□□ -1.76
CDC40YDR364C TRP2P00899 507 aaKnown RBP4.03□□□□□ -1.76
CDC40YDR364C RPL8AP17076 256 aaKnown RBP4.03□□□□□ -1.76
CDC40YDR364C AGP1P25376 633 aa4.03□□□□□ -1.76
CDC40YDR364C SRP101P32916 621 aa4.03□□□□□ -1.76
CDC40YDR364C MTH1P35198 433 aa4.03□□□□□ -1.76
CDC40YDR364C VBA5P36172 582 aa4.03□□□□□ -1.76
CDC40YDR364C IRR1P40541 1150 aa4.03□□□□□ -1.76
CDC40YDR364C ECM16Q04217 1267 aaKnown RBP4.03□□□□□ -1.76
CDC40YDR364C YLR225CQ05948 407 aaKnown RBP4.03□□□□□ -1.76
CDC40YDR364C MRC1P25588 1096 aa4.02□□□□□ -1.77
CDC40YDR364C MSH2P25847 964 aa4.02□□□□□ -1.77
CDC40YDR364C SBA1P28707 216 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C FUN30P31380 1131 aa4.02□□□□□ -1.77
CDC40YDR364C ALR2P43553 858 aa4.02□□□□□ -1.77
CDC40YDR364C HSV2P50079 448 aaPredicted RBP4.02□□□□□ -1.77
CDC40YDR364C YGR237CP50089 785 aa4.02□□□□□ -1.77
CDC40YDR364C TPO2P53283 614 aa4.02□□□□□ -1.77
CDC40YDR364C RNT1Q02555 471 aa4.02□□□□□ -1.77
CDC40YDR364C TFB2Q02939 513 aa4.02□□□□□ -1.77
CDC40YDR364C SRT1Q03175 343 aa4.02□□□□□ -1.77
CDC40YDR364C YDL124WQ07551 312 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C NUP145P49687 1317 aa4.02□□□□□ -1.77
CDC40YDR364C RPS24AP0CX31 135 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C RPS24BP0CX32 135 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C YEF3P16521 1044 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C CAD1P24813 409 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C LYP1P32487 611 aa4.02□□□□□ -1.77
CDC40YDR364C MOT2P34909 587 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C PBY1P38254 753 aa4.02□□□□□ -1.77
CDC40YDR364C GND2P53319 492 aa4.02□□□□□ -1.77
CDC40YDR364C YMR206WQ03695 313 aa4.02□□□□□ -1.77
CDC40YDR364C SHE9Q04172 456 aa4.02□□□□□ -1.77
CDC40YDR364C TAP42Q04372 366 aa4.02□□□□□ -1.77
CDC40YDR364C HRQ1Q05549 1077 aa4.02□□□□□ -1.77
CDC40YDR364C WHI4Q07655 649 aaKnown RBP4.02□□□□□ -1.77
CDC40YDR364C UPC2Q12151 913 aa4.02□□□□□ -1.77
CDC40YDR364C AUS1Q08409 1394 aa4.01□□□□□ -1.77
CDC40YDR364C PPR1P07272 904 aaPredicted RBP4.01□□□□□ -1.77
CDC40YDR364C PRP9P19736 530 aaKnown RBP4.01□□□□□ -1.77
CDC40YDR364C GIC1P38785 314 aa4.01□□□□□ -1.77
CDC40YDR364C PFD1P46988 109 aa4.01□□□□□ -1.77
CDC40YDR364C RTA1P53047 317 aa4.01□□□□□ -1.77
CDC40YDR364C MUK1Q02866 612 aa4.01□□□□□ -1.77
CDC40YDR364C NYV1Q12255 253 aa4.01□□□□□ -1.77
CDC40YDR364C TMA17Q12513 150 aa4.01□□□□□ -1.77
CDC40YDR364C ALG7P07286 448 aa4□□□□□ -1.77
CDC40YDR364C INO1P11986 533 aa4□□□□□ -1.77
CDC40YDR364C PEX6P33760 1030 aa4□□□□□ -1.77
CDC40YDR364C YER158CP40095 573 aa4□□□□□ -1.77
CDC40YDR364C DAS1P47005 663 aa4□□□□□ -1.77
CDC40YDR364C PMT3P47190 753 aa4□□□□□ -1.77
CDC40YDR364C UTP8P53276 713 aaKnown RBP4□□□□□ -1.77
CDC40YDR364C PAP2P53632 584 aaKnown RBP4□□□□□ -1.77
CDC40YDR364C YPL066WQ12194 479 aa4□□□□□ -1.77
CDC40YDR364C STE14P32584 239 aa3.99□□□□□ -1.77
CDC40YDR364C DSS1P39112 969 aa3.99□□□□□ -1.77
CDC40YDR364C PEX8P53248 589 aa3.99□□□□□ -1.77
CDC40YDR364C ERG5P54781 538 aa3.99□□□□□ -1.77
CDC40YDR364C UGO1Q03327 502 aa3.99□□□□□ -1.77
CDC40YDR364C HIM1Q06674 414 aa3.99□□□□□ -1.77
CDC40YDR364C SLX4Q12098 748 aa3.99□□□□□ -1.77
CDC40YDR364C RKM4Q12504 494 aa3.99□□□□□ -1.77
CDC40YDR364C TOM70P07213 617 aaKnown RBP3.98□□□□□ -1.77
CDC40YDR364C PRP45P28004 379 aaPredicted RBP3.98□□□□□ -1.77
CDC40YDR364C PRS1P32895 427 aaKnown RBP3.98□□□□□ -1.77
CDC40YDR364C BET3P36149 193 aa3.98□□□□□ -1.77
CDC40YDR364C MBP1P39678 833 aa3.98□□□□□ -1.77
CDC40YDR364C YJR120WP47157 116 aa3.98□□□□□ -1.77
CDC40YDR364C YDL121CQ07541 149 aa3.98□□□□□ -1.77
CDC40YDR364C YDL144CQ07589 356 aa3.98□□□□□ -1.77
CDC40YDR364C THI73Q07904 523 aa3.98□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms