RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.19□□□□□ -1.74
VIM-210ENST00000637053 TRIM42Q8IWZ5 723 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 IFT43Q96FT9 208 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 PRDM10Q9NQV6 1147 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 IGSF5Q9NSI5 407 aa4.19□□□□□ -1.74
VIM-210ENST00000637053 HMX2A2RU54 273 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 DHX15O43143 795 aaKnown RBP4.18□□□□□ -1.74
VIM-210ENST00000637053 WISP1O95388 367 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 SKIP12755 728 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 HOXA10P31260 410 aaPredicted RBP4.18□□□□□ -1.74
VIM-210ENST00000637053 GRIK1P39086 918 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 GPLD1P80108 840 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 SEMA3FQ13275 785 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 PCSK7Q16549 785 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 RNF43Q68DV7 783 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 KRT25Q7Z3Z0 450 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 EXOC8Q8IYI6 725 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 ANKRD13AQ8IZ07 590 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 DEPDC4Q8N2C3 294 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 TPCN2Q8NHX9 752 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 SPATA32Q96LK8 384 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 GDPD2Q9HCC8 539 aa4.18□□□□□ -1.74
VIM-210ENST00000637053 LOC102724159A0A0B4J2E5 919 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 PLEKHD1A6NEE1 506 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 SMARCA5O60264 1052 aaPredicted RBP4.17□□□□□ -1.74
VIM-210ENST00000637053 ANAPC15P60006 121 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 COL19A1Q14993 1142 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 PWP2Q15269 919 aaKnown RBP4.17□□□□□ -1.74
VIM-210ENST00000637053 IER5Q5VY09 327 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 NFXL1Q6ZNB6 911 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 CBLL1Q75N03 491 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 CCER1Q8TC90 406 aaPredicted RBP4.17□□□□□ -1.74
VIM-210ENST00000637053 CCDC97Q96F63 343 aaPredicted RBP4.17□□□□□ -1.74
VIM-210ENST00000637053 SERPINA10Q9UK55 444 aa4.17□□□□□ -1.74
VIM-210ENST00000637053 UNCXA6NJT0 531 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 J3QW42 95 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 TM4SF5O14894 197 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 PPP1R12BO60237 982 aaPredicted RBP4.16□□□□□ -1.74
VIM-210ENST00000637053 SASH3O75995 380 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 INPP5BP32019 993 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 CLDN10P78369 228 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 GDF6Q6KF10 455 aaPredicted RBP4.16□□□□□ -1.74
VIM-210ENST00000637053 NOL8Q76FK4 1167 aaKnown RBP4.16□□□□□ -1.74
VIM-210ENST00000637053 IL22RA1Q8N6P7 574 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 TSEN2Q8NCE0 465 aaKnown RBP4.16□□□□□ -1.74
VIM-210ENST00000637053 GALNT11Q8NCW6 608 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 SHKBP1Q8TBC3 707 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 NGLY1Q96IV0 654 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 DBNDD2Q9BQY9 259 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 C2orf49Q9BVC5 232 aaPredicted RBP4.16□□□□□ -1.74
VIM-210ENST00000637053 RIPOR2Q9Y4F9 1068 aa4.16□□□□□ -1.74
VIM-210ENST00000637053 PATL2C9JE40 543 aaKnown RBP4.15□□□□□ -1.75
VIM-210ENST00000637053 TGFBR3LH3BV60 316 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 LZTS3O60299 673 aaPredicted RBP4.15□□□□□ -1.75
VIM-210ENST00000637053 EIF2AK2P19525 551 aaKnown RBP4.15□□□□□ -1.75
VIM-210ENST00000637053 ABL2P42684 1182 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 FBLN7Q53RD9 439 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 HSP90AB4PQ58FF6 505 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 CCDC102BQ68D86 513 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 SPOCD1Q6ZMY3 1216 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 COL26A1Q96A83 441 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 PLD4Q96BZ4 506 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 FAM46AQ96IP4 442 aaKnown RBP4.15□□□□□ -1.75
VIM-210ENST00000637053 KCNK4Q9NYG8 393 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 ZNF777Q9ULD5 760 aaPredicted RBP4.15□□□□□ -1.75
VIM-210ENST00000637053 CHMP3Q9Y3E7 222 aa4.15□□□□□ -1.75
VIM-210ENST00000637053 RARAP10276 462 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 ITGB5P18084 799 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 SOX11P35716 441 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 NRLP54845 237 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 LCE5AQ5TCM9 118 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 UTP4Q969X6 686 aaKnown RBP4.14□□□□□ -1.75
VIM-210ENST00000637053 ATAD2Q6PL18 1390 aa4.14□□□□□ -1.75
VIM-210ENST00000637053 USP17L5A8MUK1 530 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 DKK1O94907 266 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 BRD1O95696 1058 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 CENPBP07199 599 aaPredicted RBP4.13□□□□□ -1.75
VIM-210ENST00000637053 MCCP23508 829 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 IDH3AP50213 366 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 WASHC4Q2M389 1173 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 KIAA1211Q6ZU35 1233 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 CNPY4Q8N129 248 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 STAG2Q8N3U4 1231 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 GPATCH11Q8N954 259 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 NFATC2IPQ8NCF5 419 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 MYRFLQ96LU7 910 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 DNAJC2Q99543 621 aaKnown RBP4.13□□□□□ -1.75
VIM-210ENST00000637053 ALG2Q9H553 416 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 SRA1Q9HD15 236 aaKnown RBP4.13□□□□□ -1.75
VIM-210ENST00000637053 TRIM33Q9UPN9 1127 aa4.13□□□□□ -1.75
VIM-210ENST00000637053 LOC102724428A0A0B4J2F2 783 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 WDR64B1ANS9 1081 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 M0R2N6 131 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 MARCH6O60337 910 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 SIK1P57059 783 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 ZNF124Q15973 351 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 HIF1AQ16665 826 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 RTN1Q16799 776 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 MSMPQ1L6U9 139 aa4.12□□□□□ -1.75
VIM-210ENST00000637053 ZNF648Q5T619 568 aaPredicted RBP4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms