RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 GGA1Q9UJY5 639 aa10.73□□□□□ -0.69
GGA3-223ENST00000621870 PLCG2P16885 1265 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 LIG1P18858 919 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 TMEM266Q2M3C6 531 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 CCDC12Q8WUD4 166 aaPredicted RBP10.72□□□□□ -0.69
GGA3-223ENST00000621870 SMARCE1Q969G3 411 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 ESYT1Q9BSJ8 1104 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 DEF6Q9H4E7 631 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.72□□□□□ -0.693e-9■■■■■ 44.2
GGA3-223ENST00000621870 RXRBP28702 533 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 PPFIBP1Q86W92 1011 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 CARD10Q9BWT7 1032 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 KRT23Q9C075 422 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 BCS1LQ9Y276 419 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 UBA7P41226 1012 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 NOM1Q5C9Z4 860 aaKnown RBP10.72□□□□□ -0.69
GGA3-223ENST00000621870 MNS1Q8NEH6 495 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 SUCLG2Q96I99 432 aa10.72□□□□□ -0.69
GGA3-223ENST00000621870 ZBTB7BO15156 539 aaPredicted RBP10.71□□□□□ -0.69
GGA3-223ENST00000621870 GJB2P29033 226 aa10.71□□□□□ -0.69
GGA3-223ENST00000621870 BRINP3Q76B58 766 aa10.71□□□□□ -0.69
GGA3-223ENST00000621870 TEX11Q8IYF3 940 aa10.71□□□□□ -0.69
GGA3-223ENST00000621870 INSRP06213 1382 aa10.71□□□□□ -0.7
GGA3-223ENST00000621870 RNF113AO15541 343 aaKnown RBP10.71□□□□□ -0.7
GGA3-223ENST00000621870 MBD4O95243 580 aa10.71□□□□□ -0.7
GGA3-223ENST00000621870 RPS8P62241 208 aaKnown RBP10.71□□□□□ -0.7
GGA3-223ENST00000621870 TCIRG1Q13488 830 aa10.71□□□□□ -0.7
GGA3-223ENST00000621870 PLS1Q14651 629 aa10.71□□□□□ -0.7
GGA3-223ENST00000621870 SEPT11Q9NVA2 429 aaKnown RBP10.71□□□□□ -0.7
GGA3-223ENST00000621870 CNNM2Q9H8M5 875 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 TCP11L1Q9NUJ3 509 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 NDUFB9Q9Y6M9 179 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 MYO5CQ9NQX4 1742 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 SSFA2P28290 1259 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 CCDC173Q0VFZ6 552 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 PUM3Q15397 648 aaKnown RBP10.7□□□□□ -0.7
GGA3-223ENST00000621870 RTN1Q16799 776 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 TMTC2Q8N394 836 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 NLRP1Q9C000 1473 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 GPR162Q16538 588 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 MAP3K11Q16584 847 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 TTC41PQ6P2S7 1318 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 TTC37Q6PGP7 1564 aa10.7□□□□□ -0.7
GGA3-223ENST00000621870 PNMA6EA0A0J9YXQ4 647 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 PRC1O43663 620 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 EIF5P55010 431 aaKnown RBP10.69□□□□□ -0.7
GGA3-223ENST00000621870 PRKG1Q13976 671 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 PPP4R3AQ6IN85 833 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 FAM196AQ6ZSG2 479 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 OTUD7AQ8TE49 926 aaPredicted RBP10.69□□□□□ -0.7
GGA3-223ENST00000621870 EHMT1Q9H9B1 1298 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 FBXO3Q9UK99 471 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 DENND2AQ9ULE3 1009 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 ZBTB1Q9Y2K1 713 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 SAMD9LQ8IVG5 1584 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 STX6O43752 255 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 BAG4O95429 457 aaKnown RBP10.69□□□□□ -0.7
GGA3-223ENST00000621870 HEATR3Q7Z4Q2 680 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 SMC5Q8IY18 1101 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 CAGE1Q8TC20 777 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 CCDC39Q9UFE4 941 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 CFAP100Q494V2 611 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 TTC6Q86TZ1 520 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 FAM177A1Q8N128 213 aaPredicted RBP10.69□□□□□ -0.7
GGA3-223ENST00000621870 XAGE2Q96GT9 111 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 SAP30BPQ9UHR5 308 aaKnown RBP10.69□□□□□ -0.7
GGA3-223ENST00000621870 ERBB3P21860 1342 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 WDR17Q8IZU2 1322 aa10.69□□□□□ -0.7
GGA3-223ENST00000621870 SYCE3A1L190 88 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 PRDM1O75626 825 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 TNNI3KQ59H18 835 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 USPL1Q5W0Q7 1092 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 ZNF772Q68DY9 489 aaPredicted RBP10.68□□□□□ -0.7
GGA3-223ENST00000621870 Q6ZUG5 572 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 KRT27Q7Z3Y8 459 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 CKAP2LQ8IYA6 745 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 FSIP1Q8NA03 581 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 ZKSCAN3Q9BRR0 538 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 ALG1Q9BT22 464 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 FPGT-TNNI3KV9GXZ4 949 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 RXRAP19793 462 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 GNAQP50148 359 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 RAB3GAP1Q15042 981 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 PLEKHM2Q8IWE5 1019 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 CNNM3Q8NE01 707 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 ERVK-7P63135 1459 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 BIN1O00499 593 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 PPP1R12BO60237 982 aaPredicted RBP10.68□□□□□ -0.7
GGA3-223ENST00000621870 EIF6P56537 245 aaKnown RBP10.68□□□□□ -0.7
GGA3-223ENST00000621870 TMX3Q96JJ7 454 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 ARHGEF5Q12774 1597 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 PPIP5K2O43314 1243 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 GNAT2P19087 354 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 SEPT12Q8IYM1 358 aa10.68□□□□□ -0.7
GGA3-223ENST00000621870 TNNI2P48788 182 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 NEURL1BA8MQ27 555 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 NAPAP54920 295 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 TCP10Q12799 353 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 CCDC129Q6ZRS4 1044 aa10.67□□□□□ -0.7
GGA3-223ENST00000621870 FAM43AQ8N2R8 423 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms