RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 DTWD1Q8N5C7 304 aa10.05□□□□□ -0.8
VPS29-212ENST00000621131 NUDT16Q96DE0 195 aaKnown RBP10.05□□□□□ -0.8
VPS29-212ENST00000621131 GHRHP01286 108 aa10.04□□□□□ -0.8
VPS29-212ENST00000621131 ADGRE1Q14246 886 aa10.04□□□□□ -0.8
VPS29-212ENST00000621131 NOM1Q5C9Z4 860 aaKnown RBP10.04□□□□□ -0.8
VPS29-212ENST00000621131 SHISA2Q6UWI4 295 aa10.04□□□□□ -0.8
VPS29-212ENST00000621131 FBXO11Q86XK2 927 aa10.04□□□□□ -0.8
VPS29-212ENST00000621131 TTC39BQ5VTQ0 682 aaPredicted RBP10.03□□□□□ -0.8
VPS29-212ENST00000621131 NPR3P17342 541 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 XKR5Q6UX68 686 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 EDEM1Q92611 657 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 GGNBP2Q9H3C7 697 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 ELP3Q9H9T3 547 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 TPSG1Q9NRR2 321 aa10.02□□□□□ -0.81
VPS29-212ENST00000621131 ABI2Q9NYB9 513 aaPredicted RBP10.02□□□□□ -0.81
VPS29-212ENST00000621131 KIF4AO95239 1232 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 MPSTP25325 297 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 EIF1AXP47813 144 aaKnown RBP10.01□□□□□ -0.81
VPS29-212ENST00000621131 HYAL2Q12891 473 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 MTMR3Q13615 1198 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 MBTPS1Q14703 1052 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 PDE12Q6L8Q7 609 aaKnown RBP10.01□□□□□ -0.81
VPS29-212ENST00000621131 ERICH6Q7L0X2 663 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 RBSNQ9H1K0 784 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 TMEM63CQ9P1W3 806 aa10.01□□□□□ -0.81
VPS29-212ENST00000621131 DEAF1O75398 565 aaPredicted RBP10□□□□□ -0.81
VPS29-212ENST00000621131 PDGFAP04085 211 aa10□□□□□ -0.81
VPS29-212ENST00000621131 CYP2E1P05181 493 aaPredicted RBP10□□□□□ -0.81
VPS29-212ENST00000621131 RPLP1P05386 114 aaKnown RBP10□□□□□ -0.81
VPS29-212ENST00000621131 NRG1Q02297 640 aaPredicted RBP10□□□□□ -0.81
VPS29-212ENST00000621131 GDF6Q6KF10 455 aaPredicted RBP10□□□□□ -0.81
VPS29-212ENST00000621131 ITGB7P26010 798 aa9.99□□□□□ -0.81
VPS29-212ENST00000621131 MZF1P28698 734 aaPredicted RBP9.99□□□□□ -0.81
VPS29-212ENST00000621131 DNM1Q05193 864 aaKnown RBP9.99□□□□□ -0.81
VPS29-212ENST00000621131 RSPO4Q2I0M5 234 aaPredicted RBP9.99□□□□□ -0.81
VPS29-212ENST00000621131 NKAPLQ5M9Q1 402 aa9.99□□□□□ -0.81
VPS29-212ENST00000621131 IL22RA1Q8N6P7 574 aa9.99□□□□□ -0.81
VPS29-212ENST00000621131 CNTN3Q9P232 1028 aa9.99□□□□□ -0.81
VPS29-212ENST00000621131 TRIM33Q9UPN9 1127 aa9.99□□□□□ -0.81
VPS29-212ENST00000621131 SUPT5HO00267 1087 aaKnown RBP9.98□□□□□ -0.81
VPS29-212ENST00000621131 ZNF438Q7Z4V0 828 aa9.98□□□□□ -0.81
VPS29-212ENST00000621131 USTQ9Y2C2 406 aa9.98□□□□□ -0.81
VPS29-212ENST00000621131 DLL1O00548 723 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 ATP11AP98196 1134 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 ALKBH2Q6NS38 261 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 IGF2-ASQ6U949 168 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 TXNRD3Q86VQ6 643 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 CACTIN-AS1Q8N1I8 211 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 CEP120Q8N960 986 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 SPACA7Q96KW9 195 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 SEMA6BQ9H3T3 888 aa9.97□□□□□ -0.81
VPS29-212ENST00000621131 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.97□□□□□ -0.81
VPS29-212ENST00000621131 A6NHS1 94 aa9.96□□□□□ -0.82
VPS29-212ENST00000621131 FKBP4Q02790 459 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS29-212ENST00000621131 SALL4Q9UJQ4 1053 aa9.96□□□□□ -0.82
VPS29-212ENST00000621131 USP21Q9UK80 565 aa9.96□□□□□ -0.82
VPS29-212ENST00000621131 POLIQ9UNA4 740 aa9.96□□□□□ -0.82
VPS29-212ENST00000621131 MTMR7Q9Y216 660 aa9.96□□□□□ -0.82
VPS29-212ENST00000621131 FAM13AO94988 1023 aa9.95□□□□□ -0.82
VPS29-212ENST00000621131 PCSK2P16519 638 aa9.95□□□□□ -0.82
VPS29-212ENST00000621131 SF3B2Q13435 895 aaKnown RBP9.95□□□□□ -0.82
VPS29-212ENST00000621131 ADAMTSL4Q6UY14 1074 aa9.95□□□□□ -0.82
VPS29-212ENST00000621131 C1orf127Q8N9H9 656 aa9.95□□□□□ -0.82
VPS29-212ENST00000621131 RASSF4Q9H2L5 321 aa9.95□□□□□ -0.82
VPS29-212ENST00000621131 SETDB1Q15047 1291 aa9.94□□□□□ -0.82
VPS29-212ENST00000621131 C8orf34Q49A92 452 aa9.94□□□□□ -0.82
VPS29-212ENST00000621131 CEP135Q66GS9 1140 aa9.94□□□□□ -0.82
VPS29-212ENST00000621131 ARID3AQ99856 593 aa9.94□□□□□ -0.82
VPS29-212ENST00000621131 SSBP4Q9BWG4 385 aaPredicted RBP9.94□□□□□ -0.82
VPS29-212ENST00000621131 PBX4Q9BYU1 374 aa9.94□□□□□ -0.82
VPS29-212ENST00000621131 FZD6O60353 706 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 NCAPG2Q86XI2 1143 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 WFDC12Q8WWY7 111 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 MUC3BQ9H195 1237 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 CHRDQ9H2X0 955 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 ANO2Q9NQ90 1003 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 PPME1Q9Y570 386 aa9.93□□□□□ -0.82
VPS29-212ENST00000621131 SMNDC1O75940 238 aaKnown RBP eCLIP9.92□□□□□ -0.826e-11■■■■□ 20.7
VPS29-212ENST00000621131 ABL1P00519 1130 aa9.92□□□□□ -0.82
VPS29-212ENST00000621131 SRA1Q9HD15 236 aaKnown RBP9.92□□□□□ -0.82
VPS29-212ENST00000621131 KANSL3Q9P2N6 904 aa9.92□□□□□ -0.82
VPS29-212ENST00000621131 CES1P23141 567 aa9.91□□□□□ -0.82
VPS29-212ENST00000621131 NOS3P29474 1203 aa9.91□□□□□ -0.82
VPS29-212ENST00000621131 MAP4K3Q8IVH8 894 aa9.91□□□□□ -0.82
VPS29-212ENST00000621131 TTC16Q8NEE8 873 aa9.91□□□□□ -0.82
VPS29-212ENST00000621131 POP1Q99575 1024 aaKnown RBP9.91□□□□□ -0.82
VPS29-212ENST00000621131 LACRTQ9GZZ8 138 aa9.91□□□□□ -0.82
VPS29-212ENST00000621131 LINC01387J3KSC0 135 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 NFKBIEO00221 500 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 DYRK3O43781 588 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 CDC27P30260 824 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 IREB2P48200 963 aaKnown RBP9.9□□□□□ -0.82
VPS29-212ENST00000621131 ZNF211Q13398 564 aaPredicted RBP9.9□□□□□ -0.82
VPS29-212ENST00000621131 AAMPQ13685 434 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 ECM1Q16610 540 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 TMEM130Q8N3G9 435 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 PMEPA1Q969W9 287 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 CCDC87Q9NVE4 849 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 TIMELESSQ9UNS1 1208 aa9.9□□□□□ -0.82
VPS29-212ENST00000621131 TM4SF5O14894 197 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms