RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 PALD1Q9ULE6 856 aa12.11□□□□□ -0.47
VPS11-207ENST00000620429 TTC21AQ8NDW8 1320 aa12.11□□□□□ -0.47
VPS11-207ENST00000620429 NPHP1O15259 732 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 C21orf2O43822 256 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 AMPHP49418 695 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 ZKSCAN8Q15776 578 aaPredicted RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 ESYT1Q9BSJ8 1104 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 RGS12O14924 1447 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 TUBB4AP04350 444 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 TPM1P09493 284 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 SSR1P43307 286 aaKnown RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 ZRSR1Q15695 479 aaKnown RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 TPRNQ4KMQ1 711 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 CCAR2Q8N163 923 aaKnown RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 ANO2Q9NQ90 1003 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 CCDC9Q9Y3X0 531 aaKnown RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 SASH3O75995 380 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 PPP2R5AQ15172 486 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 MTHFSDQ2M296 383 aaKnown RBP12.1□□□□□ -0.47
VPS11-207ENST00000620429 EYA1Q99502 592 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 SRCIN1Q9C0H9 1055 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 OSBPL3Q9H4L5 887 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 CNPY2Q9Y2B0 182 aa12.1□□□□□ -0.47
VPS11-207ENST00000620429 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS11-207ENST00000620429 SLC4A10Q6U841 1118 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 TDRD7Q8NHU6 1098 aaKnown RBP12.09□□□□□ -0.47
VPS11-207ENST00000620429 LTV1Q96GA3 475 aaPredicted RBP12.09□□□□□ -0.47
VPS11-207ENST00000620429 NGLY1Q96IV0 654 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 UPF3BQ9BZI7 483 aaKnown RBP12.09□□□□□ -0.47
VPS11-207ENST00000620429 TRIM5Q9C035 493 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 CLIP2Q9UDT6 1046 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 C1orf167Q5SNV9 1468 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 CLSTN1O94985 981 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 CCDC144BQ3MJ40 725 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 CCDC125Q86Z20 511 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 CCDC144CPQ8IYA2 1237 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 DNAAF4Q8WXU2 420 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 MRVI1Q9Y6F6 885 aa12.09□□□□□ -0.47
VPS11-207ENST00000620429 KIF1AQ12756 1690 aa12.08□□□□□ -0.47
VPS11-207ENST00000620429 A0A087WUV0 522 aaPredicted RBP12.08□□□□□ -0.48
VPS11-207ENST00000620429 SGSM2O43147 1006 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 CCDC158Q5M9N0 1113 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 TADA2BQ86TJ2 420 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 ABTB2Q8N961 1025 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 STAG1Q8WVM7 1258 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 RILPL2Q969X0 211 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 PIK3C2AO00443 1686 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 TTC36A6NLP5 189 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 SLC4A2P04920 1241 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 LUZP1Q86V48 1076 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 UBXN4Q92575 508 aa12.08□□□□□ -0.48
VPS11-207ENST00000620429 SOS2Q07890 1332 aaPredicted RBP12.08□□□□□ -0.48
VPS11-207ENST00000620429 SBNO1A3KN83 1393 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 FLT4P35916 1363 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 CHL1O00533 1208 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 SKILP12757 684 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 USP8P40818 1118 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 LRRN4CLQ8ND94 238 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 AFF2P51816 1311 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 SMC2O95347 1197 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 LIG1P18858 919 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 ANAPC15P60006 121 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 BIRC2Q13490 618 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 CC2D1AQ6P1N0 951 aaPredicted RBP12.07□□□□□ -0.48
VPS11-207ENST00000620429 CBX8Q9HC52 389 aa12.07□□□□□ -0.48
VPS11-207ENST00000620429 A1CFQ9NQ94 594 aaKnown RBP12.07□□□□□ -0.48
VPS11-207ENST00000620429 RGPD1P0DJD0 1748 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 F6X3S4 739 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 CCZ1BP86790 482 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 CCZ1P86791 482 aaPredicted RBP12.06□□□□□ -0.48
VPS11-207ENST00000620429 TYRO3Q06418 890 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 USHBP1Q8N6Y0 703 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 SRRTQ9BXP5 876 aaKnown RBP12.06□□□□□ -0.48
VPS11-207ENST00000620429 SEC31AO94979 1220 aaKnown RBP12.06□□□□□ -0.48
VPS11-207ENST00000620429 CHMLP26374 656 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 HOXC9P31274 260 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 NBPF6Q5VWK0 638 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 NBPF5PQ86XG9 351 aaPredicted RBP12.06□□□□□ -0.48
VPS11-207ENST00000620429 NBPF4Q96M43 638 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 PDRG1Q9NUG6 133 aa12.06□□□□□ -0.48
VPS11-207ENST00000620429 PHF8Q9UPP1 1060 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ATP6V1DQ9Y5K8 247 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ARHGEF10O15013 1369 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ATRNO75882 1429 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 CRB1P82279 1406 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 EFCAB8A8MWE9 144 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ZSCAN22P10073 491 aaPredicted RBP12.05□□□□□ -0.48
VPS11-207ENST00000620429 SNW1Q13573 536 aaKnown RBP12.05□□□□□ -0.48
VPS11-207ENST00000620429 MAP3K11Q16584 847 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 SARM1Q6SZW1 724 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ITFG2Q969R8 447 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 MRFAP1L1Q96HT8 127 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 LRRCC1Q9C099 1032 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 FAM107BQ9H098 131 aa12.05□□□□□ -0.48
VPS11-207ENST00000620429 ANKARQ7Z5J8 1434 aa12.04□□□□□ -0.48
VPS11-207ENST00000620429 IGSF1Q8N6C5 1336 aa12.04□□□□□ -0.48
VPS11-207ENST00000620429 ANKRD33BA6NCL7 494 aa12.04□□□□□ -0.48
VPS11-207ENST00000620429 FOXR1Q6PIV2 292 aa12.04□□□□□ -0.48
VPS11-207ENST00000620429 ERC1Q8IUD2 1116 aa12.04□□□□□ -0.48
VPS11-207ENST00000620429 IL17RAQ96F46 866 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms