RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 STX6O43752 255 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 BRD4O60885 1362 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ATP10BO94823 1461 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 NSD2O96028 1365 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ZFYP08048 801 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 CEP57L1Q8IYX8 460 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 SYCP3Q8IZU3 236 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 PIK3R4Q99570 1358 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 THUMPD2Q9BTF0 503 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ZBED2Q9BTP6 218 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC8Q9H0W5 538 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 MCM9Q9NXL9 1143 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ALKQ9UM73 1620 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ABCC11Q96J66 1382 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 RAD50Q92878 1312 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 DKC1O60832 514 aaKnown RBP eCLIP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 CAPN15O75808 1086 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 NBPF7P0C2Y1 421 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 EN1Q05925 392 aaPredicted RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 LMBR1LQ6UX01 489 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC129Q6ZRS4 1044 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ZNF354CQ86Y25 554 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 RGS22Q8NE09 1264 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 PANK1Q8TE04 598 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 ESR2Q92731 530 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 SPATA32Q96LK8 384 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 TSG101Q99816 390 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 C22orf23Q9BZE7 217 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 AP5M1Q9H0R1 490 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 C1orf115Q9H7X2 142 aa3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 THRAP3Q9Y2W1 955 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 NOC2LQ9Y3T9 749 aaKnown RBP3.4□□□□□ -1.87
SMCHD1-203ENST00000577880 AGLP35573 1532 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TMEM2Q9UHN6 1383 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 MAGEB6P1A0A0J9YX57 407 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PHACTR2O75167 634 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 MAP4K4O95819 1239 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ATP2B4P23634 1241 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 NUCB2P80303 420 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DHX8Q14562 1220 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 NOM1Q5C9Z4 860 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CIAPIN1Q6FI81 312 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TMTC2Q8N394 836 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PPP2R3CQ969Q6 453 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 COL26A1Q96A83 441 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CALML4Q96GE6 196 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 LRRC27Q9C0I9 530 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DEF6Q9H4E7 631 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 AZI2Q9H6S1 392 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TCP11L1Q9NUJ3 509 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PNMA2Q9UL42 364 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GINS2Q9Y248 185 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DIP2AQ14689 1571 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PRXQ9BXM0 1461 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ERVV-2B6SEH9 535 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TBCAO75347 108 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ALDH1L1O75891 902 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 HMGB1P09429 215 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 NEK4P51957 841 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 STK3Q13188 491 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GRIPAP1Q4V328 841 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 FAM182BQ5T319 152 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CWC27Q6UX04 472 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 KSR2Q6VAB6 950 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DNAJC10Q8IXB1 793 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC148Q8NFR7 591 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TEKT1Q969V4 418 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GJD4Q96KN9 370 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 FAM193BQ96PV7 902 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 IMPG2Q9BZV3 1241 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 TRIM6Q9C030 488 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC4A4Q9Y6R1 1079 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DDX49Q9Y6V7 483 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GOLIM4O00461 696 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PDE8AO60658 829 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 FGFR1OPO95684 399 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SERPINB2P05120 415 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 NEFHP12036 1026 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DNM2P50570 870 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 BRPF1P55201 1214 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 RRP1P56182 461 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 RPS8P62241 208 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ZRSR2Q15696 482 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ZSCAN31Q96LW9 406 aaPredicted RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 KRT23Q9C075 422 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 PNMA3Q9UL41 463 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CNPY2Q9Y2B0 182 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GPATCH8Q9UKJ3 1502 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SHANK2Q9UPX8 1470 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 CROCC2H7BZ55 1655 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 DEPDC5O75140 1603 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 LOC102724428A0A0B4J2F2 783 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GOLGA8AA7E2F4 631 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GOLGA8BA8MQT2 603 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 RNMTO43148 476 aaKnown RBP3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 ANXA1P04083 346 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 GNAT2P19087 354 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 HOXC9P31274 260 aa3.39□□□□□ -1.87
SMCHD1-203ENST00000577880 SIK1P57059 783 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms