RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 YDJCA8MPS7 323 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 ZNF853P0CG23 659 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 NOGQ13253 232 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 GRAPQ13588 217 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 PDIA6Q15084 440 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 ALDH1L2Q3SY69 923 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 TBC1D10BQ4KMP7 808 aaPredicted RBP12.86□□□□□ -0.35
SS18-207ENST00000577636 COPS6Q7L5N1 327 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 GRAPLQ8TC17 118 aaPredicted RBP12.86□□□□□ -0.35
SS18-207ENST00000577636 TRPM7Q96QT4 1865 aa12.86□□□□□ -0.35
SS18-207ENST00000577636 CASP8AP2Q9UKL3 1982 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 AAMPQ13685 434 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 ZKSCAN2Q63HK3 967 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 NLRP10Q86W26 655 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 XAGE3Q8WTP9 111 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 CRBNQ96SW2 442 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 DBNDD1Q9H9R9 158 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 MBIPQ9NS73 344 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 NSFL1CQ9UNZ2 370 aaKnown RBP12.85□□□□□ -0.35
SS18-207ENST00000577636 ERBB4Q15303 1308 aa12.85□□□□□ -0.35
SS18-207ENST00000577636 C6orf229H3BNL8 230 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 PSMD14O00487 310 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 CHL1O00533 1208 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 ZNF157P51786 506 aaPredicted RBP12.84□□□□□ -0.35
SS18-207ENST00000577636 DOK7Q18PE1 504 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 WASHC4Q2M389 1173 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 B4GALNT3Q6L9W6 998 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 RGMBQ6NW40 437 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 KRT26Q7Z3Y9 468 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 FTSJ3Q8IY81 847 aaKnown RBP12.84□□□□□ -0.35
SS18-207ENST00000577636 C2orf69Q8N8R5 385 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 BABAM1Q9NWV8 329 aa12.84□□□□□ -0.35
SS18-207ENST00000577636 ADM5C9JUS6 153 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 TRPA1O75762 1119 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 SOX10P56693 466 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 KIF23Q02241 960 aaPredicted RBP12.83□□□□□ -0.36
SS18-207ENST00000577636 TCIRG1Q13488 830 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 TWISTNBQ3B726 338 aaPredicted RBP12.83□□□□□ -0.36
SS18-207ENST00000577636 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
SS18-207ENST00000577636 LRP10Q7Z4F1 713 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
SS18-207ENST00000577636 CHMP4AQ9BY43 222 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 GBA2Q9HCG7 927 aaPredicted RBP12.83□□□□□ -0.36
SS18-207ENST00000577636 SH3TC1Q8TE82 1336 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 CDHR2Q9BYE9 1310 aa12.83□□□□□ -0.36
SS18-207ENST00000577636 LAMB4A4D0S4 1761 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 THSD7BQ9C0I4 1608 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 G3V3G9 751 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 EGFRP00533 1210 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 DCAF8Q5TAQ9 597 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 KCNQ5Q9NR82 932 aa12.82□□□□□ -0.36
SS18-207ENST00000577636 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 SSH1Q8WYL5 1049 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 DPF2Q92785 391 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 CELF1Q92879 486 aaKnown RBP12.81□□□□□ -0.36
SS18-207ENST00000577636 CCDC102AQ96A19 550 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 FAM89AQ96GI7 184 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 CHMP4BQ9H444 224 aaKnown RBP12.81□□□□□ -0.36
SS18-207ENST00000577636 RNF186Q9NXI6 227 aa12.81□□□□□ -0.36
SS18-207ENST00000577636 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
SS18-207ENST00000577636 ATP5J2-PTCD1G3V325 749 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 ECE2O60344 883 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 VAMP4O75379 141 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 GPSM2P81274 684 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 KRT24Q2M2I5 525 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 TMC4Q7Z404 712 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
SS18-207ENST00000577636 POLLQ9UGP5 575 aa12.8□□□□□ -0.36
SS18-207ENST00000577636 ELL2O00472 640 aaPredicted RBP12.79□□□□□ -0.36
SS18-207ENST00000577636 KIF4BQ2VIQ3 1234 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 ATF7IPQ6VMQ6 1270 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 SULF1Q8IWU6 871 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 EYA3Q99504 573 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 PCDH10Q9P2E7 1040 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 KDM3BQ7LBC6 1761 aa12.79□□□□□ -0.36
SS18-207ENST00000577636 C8orf58Q8NAV2 365 aa12.78□□□□□ -0.36
SS18-207ENST00000577636 ARHGAP45Q92619 1136 aa12.78□□□□□ -0.36
SS18-207ENST00000577636 CSRNP1Q96S65 589 aa12.78□□□□□ -0.36
SS18-207ENST00000577636 ZC3H12CQ9C0D7 883 aaKnown RBP12.78□□□□□ -0.36
SS18-207ENST00000577636 GGA3Q9NZ52 723 aa12.78□□□□□ -0.36
SS18-207ENST00000577636 NOB1Q9ULX3 412 aaKnown RBP12.78□□□□□ -0.36
SS18-207ENST00000577636 ASTN2O75129 1339 aaPredicted RBP12.78□□□□□ -0.36
SS18-207ENST00000577636 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
SS18-207ENST00000577636 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.37
SS18-207ENST00000577636 PANK1Q8TE04 598 aa12.77□□□□□ -0.37
SS18-207ENST00000577636 API5Q9BZZ5 524 aaKnown RBP12.77□□□□□ -0.37
SS18-207ENST00000577636 SAGE1Q9NXZ1 904 aa12.77□□□□□ -0.37
SS18-207ENST00000577636 CHPF2Q9P2E5 772 aa12.77□□□□□ -0.37
SS18-207ENST00000577636 COG6Q9Y2V7 657 aa12.77□□□□□ -0.37
SS18-207ENST00000577636 SLC10A3P09131 477 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 RPS8P62241 208 aaKnown RBP12.76□□□□□ -0.37
SS18-207ENST00000577636 SF3B3Q15393 1217 aaKnown RBP12.76□□□□□ -0.37
SS18-207ENST00000577636 ANKRD13DQ6ZTN6 518 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 PLBD2Q8NHP8 589 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 TBC1D16Q8TBP0 767 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 CLUAP1Q96AJ1 413 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 CDCA5Q96FF9 252 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 STK31Q9BXU1 1019 aa12.76□□□□□ -0.37
SS18-207ENST00000577636 ANKIB1Q9P2G1 1089 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 786.4 ms