RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NSFL1CQ9UNZ2 370 aaKnown RBP24■■□□□ 1.43
CLK3-227ENST00000570296 DLL1O00548 723 aa23.99■■□□□ 1.43
CLK3-227ENST00000570296 EIF4A1P60842 406 aaKnown RBP23.99■■□□□ 1.43
CLK3-227ENST00000570296 MOB2Q70IA6 237 aa23.99■■□□□ 1.43
CLK3-227ENST00000570296 NECTIN2Q92692 538 aa23.99■■□□□ 1.43
CLK3-227ENST00000570296 C6orf229H3BNL8 230 aa23.98■■□□□ 1.43
CLK3-227ENST00000570296 DOK7Q18PE1 504 aa23.98■■□□□ 1.43
CLK3-227ENST00000570296 POLLQ9UGP5 575 aa23.98■■□□□ 1.43
CLK3-227ENST00000570296 TRIM17Q9Y577 477 aa23.98■■□□□ 1.43
CLK3-227ENST00000570296 ALDH1A1P00352 501 aa23.97■■□□□ 1.43
CLK3-227ENST00000570296 PSME4Q14997 1843 aa23.97■■□□□ 1.43
CLK3-227ENST00000570296 CFAP53Q96M91 514 aa23.97■■□□□ 1.43
CLK3-227ENST00000570296 R3HDMLQ9H3Y0 253 aa23.97■■□□□ 1.43
CLK3-227ENST00000570296 NUDCQ9Y266 331 aa23.97■■□□□ 1.43
CLK3-227ENST00000570296 SH3TC1Q8TE82 1336 aa23.96■■□□□ 1.43
CLK3-227ENST00000570296 HSP90AB3PQ58FF7 597 aa23.96■■□□□ 1.43
CLK3-227ENST00000570296 OTOP1Q7RTM1 612 aa23.96■■□□□ 1.43
CLK3-227ENST00000570296 NLRP10Q86W26 655 aa23.96■■□□□ 1.43
CLK3-227ENST00000570296 AGBL3Q8NEM8 1001 aa23.96■■□□□ 1.43
CLK3-227ENST00000570296 A0A0C4DFX4 3053 aa23.95■■□□□ 1.43
CLK3-227ENST00000570296 LRP10Q7Z4F1 713 aa23.95■■□□□ 1.42
CLK3-227ENST00000570296 GPSM2P81274 684 aa23.94■■□□□ 1.42
CLK3-227ENST00000570296 ARMC5Q96C12 935 aa23.94■■□□□ 1.42
CLK3-227ENST00000570296 TRMT112Q9UI30 125 aaKnown RBP23.94■■□□□ 1.42
CLK3-227ENST00000570296 U2AF1L5P0DN76 240 aaPredicted RBP23.93■■□□□ 1.42
CLK3-227ENST00000570296 EN2P19622 333 aaPredicted RBP23.93■■□□□ 1.42
CLK3-227ENST00000570296 U2AF1Q01081 240 aaKnown RBP eCLIP23.93■■□□□ 1.42
CLK3-227ENST00000570296 MKRN3Q13064 507 aaKnown RBP23.93■■□□□ 1.42
CLK3-227ENST00000570296 TTLL12Q14166 644 aaPredicted RBP23.93■■□□□ 1.42
CLK3-227ENST00000570296 DLG5Q8TDM6 1919 aa23.92■■□□□ 1.42
CLK3-227ENST00000570296 RSBN1LQ6PCB5 846 aaPredicted RBP23.92■■□□□ 1.42
CLK3-227ENST00000570296 TBC1D16Q8TBP0 767 aa23.92■■□□□ 1.42
CLK3-227ENST00000570296 ZC3H12CQ9C0D7 883 aaKnown RBP23.92■■□□□ 1.42
CLK3-227ENST00000570296 MYOZ2Q9NPC6 264 aa23.92■■□□□ 1.42
CLK3-227ENST00000570296 RANBP2P49792 3224 aaKnown RBP23.91■■□□□ 1.42
CLK3-227ENST00000570296 NF2P35240 595 aa23.91■■□□□ 1.42
CLK3-227ENST00000570296 TCIRG1Q13488 830 aa23.91■■□□□ 1.42
CLK3-227ENST00000570296 CELF1Q92879 486 aaKnown RBP23.91■■□□□ 1.42
CLK3-227ENST00000570296 USP17L8P0C7I0 530 aa23.9■■□□□ 1.42
CLK3-227ENST00000570296 PDIA6Q15084 440 aa23.9■■□□□ 1.42
CLK3-227ENST00000570296 THUMPD2Q9BTF0 503 aaKnown RBP23.9■■□□□ 1.42
CLK3-227ENST00000570296 PTPN22Q9Y2R2 807 aa23.9■■□□□ 1.42
CLK3-227ENST00000570296 SLC17A8Q8NDX2 589 aa23.89■■□□□ 1.41
CLK3-227ENST00000570296 ERO1AQ96HE7 468 aa23.89■■□□□ 1.41
CLK3-227ENST00000570296 G3V3G9 751 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 INHBEP58166 350 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 SF3B3Q15393 1217 aaKnown RBP23.88■■□□□ 1.41
CLK3-227ENST00000570296 DCAF8Q5TAQ9 597 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 OTUD5Q96G74 571 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 GMLQ99445 158 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 LAMB1P07942 1786 aa23.88■■□□□ 1.41
CLK3-227ENST00000570296 PRAMEF18Q5VWM3 479 aa23.87■■□□□ 1.41
CLK3-227ENST00000570296 SPRYD7Q5W111 196 aa23.87■■□□□ 1.41
CLK3-227ENST00000570296 TMEM106CQ9BVX2 250 aa23.87■■□□□ 1.41
CLK3-227ENST00000570296 PODXL2Q9NZ53 605 aa23.87■■□□□ 1.41
CLK3-227ENST00000570296 PTPN12Q05209 780 aaKnown RBP23.86■■□□□ 1.41
CLK3-227ENST00000570296 ARMC9Q7Z3E5 817 aa23.86■■□□□ 1.41
CLK3-227ENST00000570296 SCAF8Q9UPN6 1271 aaKnown RBP23.86■■□□□ 1.41
CLK3-227ENST00000570296 COL4A1P02462 1669 aa23.86■■□□□ 1.41
CLK3-227ENST00000570296 MANSC4A6NHS7 340 aaPredicted RBP23.85■■□□□ 1.41
CLK3-227ENST00000570296 IFNL1Q8IU54 200 aa23.85■■□□□ 1.41
CLK3-227ENST00000570296 CLSPNQ9HAW4 1339 aa23.84■■□□□ 1.41
CLK3-227ENST00000570296 H0YGN5 161 aa23.84■■□□□ 1.41
CLK3-227ENST00000570296 PROSER3Q2NL68 480 aa23.84■■□□□ 1.41
CLK3-227ENST00000570296 COL6A3P12111 3177 aa23.84■■□□□ 1.41
CLK3-227ENST00000570296 CNGB1Q14028 1251 aaPredicted RBP23.83■■□□□ 1.41
CLK3-227ENST00000570296 LDLRAD1Q5T700 205 aa23.83■■□□□ 1.41
CLK3-227ENST00000570296 UFL1O94874 794 aa23.82■■□□□ 1.4
CLK3-227ENST00000570296 RPS8P62241 208 aaKnown RBP23.82■■□□□ 1.4
CLK3-227ENST00000570296 NBPF9Q3BBW0 867 aa23.82■■□□□ 1.4
CLK3-227ENST00000570296 COPS6Q7L5N1 327 aa23.82■■□□□ 1.4
CLK3-227ENST00000570296 EFCC1Q9HA90 598 aa23.82■■□□□ 1.4
CLK3-227ENST00000570296 ANXA1P04083 346 aa23.81■■□□□ 1.4
CLK3-227ENST00000570296 EIF2S2P20042 333 aaKnown RBP23.81■■□□□ 1.4
CLK3-227ENST00000570296 CD99L2Q8TCZ2 262 aa23.81■■□□□ 1.4
CLK3-227ENST00000570296 ZNF333Q96JL9 665 aa23.81■■□□□ 1.4
CLK3-227ENST00000570296 GGA1Q9UJY5 639 aa23.81■■□□□ 1.4
CLK3-227ENST00000570296 XAGE3Q8WTP9 111 aa23.8■■□□□ 1.4
CLK3-227ENST00000570296 USP17L3A6NCW0 530 aa23.79■■□□□ 1.4
CLK3-227ENST00000570296 USP17L4A6NCW7 530 aa23.79■■□□□ 1.4
CLK3-227ENST00000570296 ZBTB48P10074 688 aaPredicted RBP23.79■■□□□ 1.4
CLK3-227ENST00000570296 CHRDL2Q6WN34 429 aa23.79■■□□□ 1.4
CLK3-227ENST00000570296 USP17L1Q7RTZ2 530 aa23.79■■□□□ 1.4
CLK3-227ENST00000570296 ANKIB1Q9P2G1 1089 aa23.79■■□□□ 1.4
CLK3-227ENST00000570296 IGF2BP3O00425 579 aaKnown RBP eCLIP23.78■■□□□ 1.4
CLK3-227ENST00000570296 NEFMP07197 916 aa23.78■■□□□ 1.4
CLK3-227ENST00000570296 AIMP1Q12904 312 aaKnown RBP23.78■■□□□ 1.4
CLK3-227ENST00000570296 WNT10BO00744 389 aa23.77■■□□□ 1.4
CLK3-227ENST00000570296 PODNQ7Z5L7 613 aa23.77■■□□□ 1.4
CLK3-227ENST00000570296 FAM89AQ96GI7 184 aa23.77■■□□□ 1.4
CLK3-227ENST00000570296 PRKG1Q13976 671 aa23.76■■□□□ 1.39
CLK3-227ENST00000570296 NBPF11Q86T75 865 aa23.76■■□□□ 1.39
CLK3-227ENST00000570296 OGFOD1Q8N543 542 aa23.76■■□□□ 1.39
CLK3-227ENST00000570296 ANGEL1Q9UNK9 670 aaKnown RBP23.76■■□□□ 1.39
CLK3-227ENST00000570296 MMP14P50281 582 aa23.75■■□□□ 1.39
CLK3-227ENST00000570296 SP3Q02447 781 aa23.75■■□□□ 1.39
CLK3-227ENST00000570296 CRHR2Q13324 411 aa23.75■■□□□ 1.39
CLK3-227ENST00000570296 OTUD7BQ6GQQ9 843 aa23.75■■□□□ 1.39
CLK3-227ENST00000570296 APOBEC3FQ8IUX4 373 aaKnown RBP23.75■■□□□ 1.39
CLK3-227ENST00000570296 SLC10A4Q96EP9 437 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms