RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	STARD13	Q9Y3M8	1113 aa		5.24	□□□□□ -1.57
CD44-238	ENST00000534296	SMNDC1	O75940	238 aa	Known RBP eCLIP	5.23	□□□□□ -1.57
CD44-238	ENST00000534296	NEFL	P07196	543 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	HOXB4	P17483	251 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-238	ENST00000534296	CES1	P23141	567 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	FAM26D	Q5JW98	314 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	PERM1	Q5SV97	790 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	C20orf204	Q6ZNR8	217 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	HFE2	Q6ZVN8	426 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	NCAPG2	Q86XI2	1143 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	WFDC8	Q8IUA0	241 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	TTC9	Q92623	222 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	PLD4	Q96BZ4	506 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	SMG9	Q9H0W8	520 aa	Known RBP	5.23	□□□□□ -1.57
CD44-238	ENST00000534296	ANO2	Q9NQ90	1003 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	NAGPA	Q9UK23	515 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	POLI	Q9UNA4	740 aa		5.23	□□□□□ -1.57
CD44-238	ENST00000534296	LOC100996750	A0A140TA64	210 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	SERPINB4	P48594	390 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	PDE3B	Q13370	1112 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	GPAT2	Q6NUI2	795 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	XKR5	Q6UX68	686 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	DTWD1	Q8N5C7	304 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	KCTD17	Q8N5Z5	321 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	SNX29	Q8TEQ0	813 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	TRIM11	Q96F44	468 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	LPIN3	Q9BQK8	851 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	KRTAP4-6	Q9BYQ5	205 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	MUC3B	Q9H195	1237 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	SUV39H2	Q9H5I1	410 aa		5.22	□□□□□ -1.57
CD44-238	ENST00000534296	MSTN	O14793	375 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	PHACTR2	O75167	634 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	NID1	P14543	1247 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	COL8A1	P27658	744 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	GSK3A	P49840	483 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	AFF1	P51825	1210 aa	Known RBP	5.21	□□□□□ -1.58
CD44-238	ENST00000534296	SUZ12	Q15022	739 aa	Known RBP	5.21	□□□□□ -1.58
CD44-238	ENST00000534296	MSL1	Q68DK7	614 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	C8orf86	Q6ZUL3	223 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	TXNDC2	Q86VQ3	553 aa		5.21	□□□□□ -1.58
CD44-238	ENST00000534296	SRA1	Q9HD15	236 aa	Known RBP	5.21	□□□□□ -1.58
CD44-238	ENST00000534296	ZBTB42	B2RXF5	422 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	EDN3	P14138	238 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	ELN	P15502	786 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	KCNA1	Q09470	495 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	MAP4K3	Q8IVH8	894 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	TMC1	Q8TDI8	760 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	CITED4	Q96RK1	184 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	TMEM63C	Q9P1W3	806 aa		5.2	□□□□□ -1.58
CD44-238	ENST00000534296	BIN2	Q9UBW5	565 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-238	ENST00000534296		A0A0A0MRY4	1105 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296		J3QW42	95 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296	FZD6	O60353	706 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296	NRG1	Q02297	640 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-238	ENST00000534296	PLA2G4E	Q3MJ16	856 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296	GDF6	Q6KF10	455 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-238	ENST00000534296	FAM117B	Q6P1L5	589 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296	DMRTC2	Q8IXT2	367 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-238	ENST00000534296	GJD3	Q8N144	294 aa		5.19	□□□□□ -1.58
CD44-238	ENST00000534296	GNE	Q9Y223	722 aa	Known RBP	5.19	□□□□□ -1.58
CD44-238	ENST00000534296	C9orf172	C9J069	976 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	TNFRSF21	O75509	655 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	KIF4A	O95239	1232 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	PTPRA	P18433	802 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	CABP4	P57796	275 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	CEP135	Q66GS9	1140 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	GGNBP2	Q9H3C7	697 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	CCDC87	Q9NVE4	849 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	KANSL3	Q9P2N6	904 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	AMOTL2	Q9Y2J4	779 aa		5.18	□□□□□ -1.58
CD44-238	ENST00000534296	KRBA1	A5PL33	1030 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296		A6NHS1	94 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	SOWAHD	A6NJG2	315 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	FAM229A	H3BQW9	127 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	PDIA4	P13667	645 aa	Known RBP	5.17	□□□□□ -1.58
CD44-238	ENST00000534296	COL9A3	Q14050	684 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-238	ENST00000534296	FMR1NB	Q8N0W7	255 aa	Predicted RBP	5.17	□□□□□ -1.58
CD44-238	ENST00000534296	IL22RA1	Q8N6P7	574 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	C1orf127	Q8N9H9	656 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	DMRTB1	Q96MA1	342 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	TRAIP	Q9BWF2	469 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	PBX4	Q9BYU1	374 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	USP21	Q9UK80	565 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	PPME1	Q9Y570	386 aa		5.17	□□□□□ -1.58
CD44-238	ENST00000534296	CYP2E1	P05181	493 aa	Predicted RBP	5.16	□□□□□ -1.58
CD44-238	ENST00000534296	CDC27	P30260	824 aa		5.16	□□□□□ -1.58
CD44-238	ENST00000534296	ATP11A	P98196	1134 aa		5.16	□□□□□ -1.58
CD44-238	ENST00000534296	SPOCK3	Q9BQ16	436 aa		5.16	□□□□□ -1.58
CD44-238	ENST00000534296	RASSF4	Q9H2L5	321 aa		5.16	□□□□□ -1.58
CD44-238	ENST00000534296	CNTN3	Q9P232	1028 aa		5.16	□□□□□ -1.58
CD44-238	ENST00000534296	C1QTNF9B	B2RNN3	333 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	EIF4EBP3	O60516	100 aa	Predicted RBP	5.15	□□□□□ -1.59
CD44-238	ENST00000534296	GATA4	P43694	442 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	ARHGAP4	P98171	946 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	GRIK5	Q16478	980 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	COL13A1	Q5TAT6	717 aa	Predicted RBP	5.15	□□□□□ -1.59
CD44-238	ENST00000534296	CD163	Q86VB7	1156 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	FBXO11	Q86XK2	927 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	CEP120	Q8N960	986 aa		5.15	□□□□□ -1.59
CD44-238	ENST00000534296	LACRT	Q9GZZ8	138 aa		5.15	□□□□□ -1.59

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