RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 WDR43Q15061 677 aaKnown RBP eCLIP10.53□□□□□ -0.72
NEDD8-207ENST00000533242 COPS6Q7L5N1 327 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 C2orf69Q8N8R5 385 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 PSMD14O00487 310 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 ANXA1P04083 346 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 WASHC4Q2M389 1173 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 SAMD7Q7Z3H4 446 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 KRT26Q7Z3Y9 468 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 XAGE3Q8WTP9 111 aa10.53□□□□□ -0.72
NEDD8-207ENST00000533242 KIF23Q02241 960 aaPredicted RBP10.52□□□□□ -0.72
NEDD8-207ENST00000533242 DCPSQ96C86 337 aaKnown RBP10.52□□□□□ -0.72
NEDD8-207ENST00000533242 CRBNQ96SW2 442 aa10.52□□□□□ -0.72
NEDD8-207ENST00000533242 ZBTB12Q9Y330 459 aaPredicted RBP10.52□□□□□ -0.72
NEDD8-207ENST00000533242 AIMP1Q12904 312 aaKnown RBP10.52□□□□□ -0.73
NEDD8-207ENST00000533242 TBC1D10BQ4KMP7 808 aaPredicted RBP10.52□□□□□ -0.73
NEDD8-207ENST00000533242 EYA3Q99504 573 aa10.52□□□□□ -0.73
NEDD8-207ENST00000533242 SCN9AQ15858 1988 aa10.52□□□□□ -0.73
NEDD8-207ENST00000533242 ADM5C9JUS6 153 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 SLC10A3P09131 477 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 SF3B3Q15393 1217 aaKnown RBP10.51□□□□□ -0.73
NEDD8-207ENST00000533242 DLK2Q6UY11 383 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 REM2Q8IYK8 340 aaPredicted RBP10.51□□□□□ -0.73
NEDD8-207ENST00000533242 DBNDD1Q9H9R9 158 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 RNF186Q9NXI6 227 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 APAF1O14727 1248 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 ECE2O60344 883 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 ZNF157P51786 506 aaPredicted RBP10.51□□□□□ -0.73
NEDD8-207ENST00000533242 LMOD3Q0VAK6 560 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 NSFL1CQ9UNZ2 370 aaKnown RBP10.51□□□□□ -0.73
NEDD8-207ENST00000533242 COL4A1P02462 1669 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 RTL9Q8NET4 1388 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 PAPPA2Q9BXP8 1791 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 ZNF609O15014 1411 aa10.51□□□□□ -0.73
NEDD8-207ENST00000533242 C6orf229H3BNL8 230 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 RIMBP2O15034 1052 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 EGFRP00533 1210 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 RIPK4P57078 832 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 GPSM2P81274 684 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 KIF4BQ2VIQ3 1234 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 POLLQ9UGP5 575 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 PPP4R3CPQ6ZMV5 832 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 CTU1Q7Z7A3 348 aaKnown RBP10.5□□□□□ -0.73
NEDD8-207ENST00000533242 PLBD2Q8NHP8 589 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 CELF1Q92879 486 aaKnown RBP10.5□□□□□ -0.73
NEDD8-207ENST00000533242 ISCA1Q9BUE6 129 aa10.5□□□□□ -0.73
NEDD8-207ENST00000533242 TRPA1O75762 1119 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 SOX10P56693 466 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 RBM26Q5T8P6 1007 aaKnown RBP10.49□□□□□ -0.73
NEDD8-207ENST00000533242 SULF1Q8IWU6 871 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 NECTIN2Q92692 538 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 VIL1P09327 827 aaKnown RBP10.49□□□□□ -0.73
NEDD8-207ENST00000533242 DOK7Q18PE1 504 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 CDCA5Q96FF9 252 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 CSRNP1Q96S65 589 aa10.49□□□□□ -0.73
NEDD8-207ENST00000533242 GOLGA2Q08379 1002 aa10.48□□□□□ -0.73
NEDD8-207ENST00000533242 SLFN5Q08AF3 891 aa10.48□□□□□ -0.73
NEDD8-207ENST00000533242 TBC1D16Q8TBP0 767 aa10.48□□□□□ -0.73
NEDD8-207ENST00000533242 KCNQ5Q9NR82 932 aa10.48□□□□□ -0.73
NEDD8-207ENST00000533242 GGA3Q9NZ52 723 aa10.48□□□□□ -0.73
NEDD8-207ENST00000533242 TMPOP42166 694 aaKnown RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 FKBP1BP68106 108 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 RASAL3Q86YV0 1011 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 TRMT2AQ8IZ69 625 aaKnown RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 PODXL2Q9NZ53 605 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 CHL1O00533 1208 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 HOXB7P09629 217 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 ZNF280AP59817 542 aaPredicted RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 RPS8P62241 208 aaKnown RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 PRPF38BQ5VTL8 546 aaKnown RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 ANKRD13DQ6ZTN6 518 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 FAM89AQ96GI7 184 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 ZC3H12CQ9C0D7 883 aaKnown RBP10.47□□□□□ -0.73
NEDD8-207ENST00000533242 CHPF2Q9P2E5 772 aa10.47□□□□□ -0.73
NEDD8-207ENST00000533242 TRIM28Q13263 835 aaKnown RBP10.46□□□□□ -0.73
NEDD8-207ENST00000533242 AGBL3Q8NEM8 1001 aa10.46□□□□□ -0.73
NEDD8-207ENST00000533242 ZNF646O15015 1829 aaPredicted RBP10.46□□□□□ -0.74
NEDD8-207ENST00000533242 ASTN2O75129 1339 aaPredicted RBP10.46□□□□□ -0.74
NEDD8-207ENST00000533242 PITPNM2Q9BZ72 1349 aa10.46□□□□□ -0.74
NEDD8-207ENST00000533242 G3V3G9 751 aa10.46□□□□□ -0.74
NEDD8-207ENST00000533242 IRS4O14654 1257 aaPredicted RBP10.46□□□□□ -0.74
NEDD8-207ENST00000533242 PKN2Q16513 984 aaKnown RBP10.46□□□□□ -0.74
NEDD8-207ENST00000533242 DCAF8Q5TAQ9 597 aa10.46□□□□□ -0.74
NEDD8-207ENST00000533242 ATP5J2-PTCD1G3V325 749 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 HSP90B1P14625 803 aaKnown RBP10.45□□□□□ -0.74
NEDD8-207ENST00000533242 SCARF1Q14162 830 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 HDGFL1Q5TGJ6 251 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 RSBN1LQ6PCB5 846 aaPredicted RBP10.45□□□□□ -0.74
NEDD8-207ENST00000533242 ZNF428Q96B54 188 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 DBF4Q9UBU7 674 aaPredicted RBP10.45□□□□□ -0.74
NEDD8-207ENST00000533242 PDE4DIPQ5VU43 2346 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 BCAR3O75815 825 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 UFL1O94874 794 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 KRT24Q2M2I5 525 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 ANGEL2Q5VTE6 544 aaKnown RBP10.45□□□□□ -0.74
NEDD8-207ENST00000533242 HYPKQ9NX55 129 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 GGA1Q9UJY5 639 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 HPS5Q9UPZ3 1129 aa10.45□□□□□ -0.74
NEDD8-207ENST00000533242 SPEF2Q9C093 1822 aa10.44□□□□□ -0.74
NEDD8-207ENST00000533242 GMLQ99445 158 aa10.44□□□□□ -0.74
NEDD8-207ENST00000533242 MYH3P11055 1940 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms