RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 COPRSQ9NQ92 184 aa17.04■□□□□ 0.32
CD44-224ENST00000526669 DICER1Q9UPY3 1922 aaKnown RBP17.04■□□□□ 0.32
CD44-224ENST00000526669 C21orf2O43822 256 aa17.03■□□□□ 0.32
CD44-224ENST00000526669 SURF6O75683 361 aaKnown RBP17.03■□□□□ 0.32
CD44-224ENST00000526669 BBOX1O75936 387 aa17.03■□□□□ 0.32
CD44-224ENST00000526669 OS9Q13438 667 aaPredicted RBP17.03■□□□□ 0.32
CD44-224ENST00000526669 HELBQ8NG08 1087 aaPredicted RBP17.03■□□□□ 0.32
CD44-224ENST00000526669 EYA2O00167 538 aa17.02■□□□□ 0.32
CD44-224ENST00000526669 IGHDP01880 384 aa17.02■□□□□ 0.32
CD44-224ENST00000526669 G3BP1Q13283 466 aaKnown RBP eCLIP17.02■□□□□ 0.32
CD44-224ENST00000526669 BCL11AQ9H165 835 aa17.02■□□□□ 0.32
CD44-224ENST00000526669 BSDC1Q9NW68 430 aaPredicted RBP17.02■□□□□ 0.32
CD44-224ENST00000526669 DUOX1Q9NRD9 1551 aa17.02■□□□□ 0.31
CD44-224ENST00000526669 CHRNDQ07001 517 aa17.01■□□□□ 0.31
CD44-224ENST00000526669 ATG9AQ7Z3C6 839 aa17.01■□□□□ 0.31
CD44-224ENST00000526669 MINPP1Q9UNW1 487 aa17.01■□□□□ 0.31
CD44-224ENST00000526669 ATP6V0A2Q9Y487 856 aa17.01■□□□□ 0.31
CD44-224ENST00000526669 GOLGB1Q14789 3259 aaKnown RBP17.01■□□□□ 0.31
CD44-224ENST00000526669 TAF5LO75529 589 aa17■□□□□ 0.31
CD44-224ENST00000526669 GPSM2P81274 684 aa17■□□□□ 0.31
CD44-224ENST00000526669 METTL24Q5JXM2 366 aa17■□□□□ 0.31
CD44-224ENST00000526669 SP8Q8IXZ3 490 aa17■□□□□ 0.31
CD44-224ENST00000526669 RIPOR2Q9Y4F9 1068 aa17■□□□□ 0.31
CD44-224ENST00000526669 SNAP23O00161 211 aa16.99■□□□□ 0.31
CD44-224ENST00000526669 HDAC1Q13547 482 aaPredicted RBP16.99■□□□□ 0.31
CD44-224ENST00000526669 TMC4Q7Z404 712 aa16.99■□□□□ 0.31
CD44-224ENST00000526669 C7orf43Q8WVR3 580 aa16.99■□□□□ 0.31
CD44-224ENST00000526669 GPR101Q96P66 508 aaPredicted RBP16.99■□□□□ 0.31
CD44-224ENST00000526669 RWDD1Q9H446 243 aaPredicted RBP16.99■□□□□ 0.31
CD44-224ENST00000526669 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
CD44-224ENST00000526669 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.99■□□□□ 0.31
CD44-224ENST00000526669 CIAO1O76071 339 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 SASH1O94885 1247 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 YBX3P16989 372 aaKnown RBP eCLIP16.98■□□□□ 0.31
CD44-224ENST00000526669 IL15P40933 162 aaPredicted RBP16.98■□□□□ 0.31
CD44-224ENST00000526669 TFCP2Q12800 502 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 CCDC93Q567U6 631 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 B4GALNT3Q6L9W6 998 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 TMX4Q9H1E5 349 aaPredicted RBP16.98■□□□□ 0.31
CD44-224ENST00000526669 ANKIB1Q9P2G1 1089 aa16.98■□□□□ 0.31
CD44-224ENST00000526669 NSFL1CQ9UNZ2 370 aaKnown RBP16.98■□□□□ 0.31
CD44-224ENST00000526669 SNED1Q8TER0 1413 aa16.97■□□□□ 0.31
CD44-224ENST00000526669 MYO5AQ9Y4I1 1855 aaKnown RBP16.97■□□□□ 0.31
CD44-224ENST00000526669 WTIPA6NIX2 430 aaPredicted RBP16.97■□□□□ 0.31
CD44-224ENST00000526669 SMARCA5O60264 1052 aaPredicted RBP16.97■□□□□ 0.31
CD44-224ENST00000526669 MPNDQ8N594 471 aa16.97■□□□□ 0.31
CD44-224ENST00000526669 CCDC136Q96JN2 1154 aa16.97■□□□□ 0.31
CD44-224ENST00000526669 DCTPP1Q9H773 170 aa16.97■□□□□ 0.31
CD44-224ENST00000526669 FBXO3Q9UK99 471 aa16.97■□□□□ 0.31
CD44-224ENST00000526669 XDHP47989 1333 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 MROH5Q6ZUA9 1318 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 TIAM2Q8IVF5 1701 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 UFL1O94874 794 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 GPR162Q16538 588 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 ERICH6BQ5W0A0 696 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 DPP8Q6V1X1 898 aaPredicted RBP16.96■□□□□ 0.31
CD44-224ENST00000526669 IL1RAPL2Q9NP60 686 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 PPP4R2Q9NY27 417 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 CEP126Q9P2H0 1117 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 SCN9AQ15858 1988 aa16.96■□□□□ 0.31
CD44-224ENST00000526669 AK9Q5TCS8 1911 aa16.96■□□□□ 0.3
CD44-224ENST00000526669 PSME4Q14997 1843 aa16.96■□□□□ 0.3
CD44-224ENST00000526669 ZNF609O15014 1411 aa16.96■□□□□ 0.3
CD44-224ENST00000526669 C6orf229H3BNL8 230 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 KCNJ4P48050 445 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 RASSF7Q02833 373 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 HSP90AB4PQ58FF6 505 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 VGLL2Q8N8G2 317 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 RHPN1Q8TCX5 695 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 ANKRD2Q9GZV1 360 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 GGA1Q9UJY5 639 aa16.95■□□□□ 0.3
CD44-224ENST00000526669 AKAP11Q9UKA4 1901 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 SOGA3Q5TF21 947 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 CC2D2BQ6DHV5 1058 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 ERC1Q8IUD2 1116 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 POLLQ9UGP5 575 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 GTF3C3Q9Y5Q9 886 aa16.94■□□□□ 0.3
CD44-224ENST00000526669 RAB11FIP3O75154 756 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 PDE8BO95263 885 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 ATP2B4P23634 1241 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 KLRK1P26718 216 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 ATP2B3Q16720 1220 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 ARHGAP27Q6ZUM4 889 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 TBC1D16Q8TBP0 767 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 GCC1Q96CN9 775 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 KIF1BPQ96EK5 621 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 ZNF646O15015 1829 aaPredicted RBP16.93■□□□□ 0.3
CD44-224ENST00000526669 ZNF804BA4D1E1 1349 aa16.93■□□□□ 0.3
CD44-224ENST00000526669 NFKBIEO00221 500 aa16.92■□□□□ 0.3
CD44-224ENST00000526669 RIMBP2O15034 1052 aa16.92■□□□□ 0.3
CD44-224ENST00000526669 ANKRD45Q5TZF3 282 aa16.92■□□□□ 0.3
CD44-224ENST00000526669 RTKN2Q8IZC4 609 aa16.92■□□□□ 0.3
CD44-224ENST00000526669 LRRCC1Q9C099 1032 aa16.92■□□□□ 0.3
CD44-224ENST00000526669 ADORA1P30542 326 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 TIMM10P62072 90 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 FKBP4Q02790 459 aaKnown RBP eCLIP16.91■□□□□ 0.3
CD44-224ENST00000526669 PUM3Q15397 648 aaKnown RBP16.91■□□□□ 0.3
CD44-224ENST00000526669 TNNI3KQ59H18 835 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 SMC5Q8IY18 1101 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms