RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 PLD4Q96BZ4 506 aa7.09□□□□□ -1.27
CD44-219ENST00000525685 FNDC3AQ9Y2H6 1198 aaKnown RBP7.09□□□□□ -1.27
CD44-219ENST00000525685 C9orf172C9J069 976 aa7.08□□□□□ -1.28
CD44-219ENST00000525685 WFDC8Q8IUA0 241 aa7.08□□□□□ -1.28
CD44-219ENST00000525685 RETREG2Q8NC44 543 aa7.08□□□□□ -1.28
CD44-219ENST00000525685 GTF3C2Q8WUA4 911 aaPredicted RBP7.08□□□□□ -1.28
CD44-219ENST00000525685 LENG1Q96BZ8 264 aaPredicted RBP7.08□□□□□ -1.28
CD44-219ENST00000525685 CARNS1A5YM72 827 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 GHRHP01286 108 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 ADGRE1Q14246 886 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 MBTPS1Q14703 1052 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 COL13A1Q5TAT6 717 aaPredicted RBP7.07□□□□□ -1.28
CD44-219ENST00000525685 PHLDB3Q6NSJ2 640 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 SHISA2Q6UWI4 295 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 FBXO11Q86XK2 927 aa7.07□□□□□ -1.28
CD44-219ENST00000525685 NUDT16Q96DE0 195 aaKnown RBP7.07□□□□□ -1.28
CD44-219ENST00000525685 TTC39BQ5VTQ0 682 aaPredicted RBP7.06□□□□□ -1.28
CD44-219ENST00000525685 RBSNQ9H1K0 784 aa7.06□□□□□ -1.28
CD44-219ENST00000525685 TPSG1Q9NRR2 321 aa7.06□□□□□ -1.28
CD44-219ENST00000525685 ABI2Q9NYB9 513 aaPredicted RBP7.06□□□□□ -1.28
CD44-219ENST00000525685 DEAF1O75398 565 aaPredicted RBP7.05□□□□□ -1.28
CD44-219ENST00000525685 MPSTP25325 297 aa7.05□□□□□ -1.28
CD44-219ENST00000525685 NRG1Q02297 640 aaPredicted RBP7.05□□□□□ -1.28
CD44-219ENST00000525685 NOM1Q5C9Z4 860 aaKnown RBP7.05□□□□□ -1.28
CD44-219ENST00000525685 PDE12Q6L8Q7 609 aaKnown RBP7.05□□□□□ -1.28
CD44-219ENST00000525685 EDEM1Q92611 657 aa7.05□□□□□ -1.28
CD44-219ENST00000525685 ELP3Q9H9T3 547 aa7.05□□□□□ -1.28
CD44-219ENST00000525685 KIF4AO95239 1232 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 CYP2E1P05181 493 aaPredicted RBP7.04□□□□□ -1.28
CD44-219ENST00000525685 NPR3P17342 541 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 ITGB7P26010 798 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 EIF1AXP47813 144 aaKnown RBP7.04□□□□□ -1.28
CD44-219ENST00000525685 HYAL2Q12891 473 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 MTMR3Q13615 1198 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 RSPO4Q2I0M5 234 aaPredicted RBP7.04□□□□□ -1.28
CD44-219ENST00000525685 NKAPLQ5M9Q1 402 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 TXNRD3Q86VQ6 643 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 TMEM63CQ9P1W3 806 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 TRIM33Q9UPN9 1127 aa7.04□□□□□ -1.28
CD44-219ENST00000525685 PDGFAP04085 211 aa7.03□□□□□ -1.28
CD44-219ENST00000525685 RPLP1P05386 114 aaKnown RBP7.03□□□□□ -1.28
CD44-219ENST00000525685 MZF1P28698 734 aaPredicted RBP7.03□□□□□ -1.28
CD44-219ENST00000525685 ATP11AP98196 1134 aa7.03□□□□□ -1.28
CD44-219ENST00000525685 DNM1Q05193 864 aaKnown RBP7.03□□□□□ -1.28
CD44-219ENST00000525685 GDF6Q6KF10 455 aaPredicted RBP7.03□□□□□ -1.28
CD44-219ENST00000525685 ZNF438Q7Z4V0 828 aa7.03□□□□□ -1.28
CD44-219ENST00000525685 IL22RA1Q8N6P7 574 aa7.03□□□□□ -1.28
CD44-219ENST00000525685 USTQ9Y2C2 406 aa7.03□□□□□ -1.28
CD44-219ENST00000525685 DLL1O00548 723 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 XKR5Q6UX68 686 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 SPACA7Q96KW9 195 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 GGNBP2Q9H3C7 697 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 SEMA6BQ9H3T3 888 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 CNTN3Q9P232 1028 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 USP21Q9UK80 565 aa7.02□□□□□ -1.29
CD44-219ENST00000525685 A6NHS1 94 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 PCSK2P16519 638 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 ALKBH2Q6NS38 261 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 IGF2-ASQ6U949 168 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 CACTIN-AS1Q8N1I8 211 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 MTMR7Q9Y216 660 aa7.01□□□□□ -1.29
CD44-219ENST00000525685 FAM13AO94988 1023 aa7□□□□□ -1.29
CD44-219ENST00000525685 SETDB1Q15047 1291 aa7□□□□□ -1.29
CD44-219ENST00000525685 CEP135Q66GS9 1140 aa7□□□□□ -1.29
CD44-219ENST00000525685 B4GALNT3Q6L9W6 998 aa7□□□□□ -1.29
CD44-219ENST00000525685 CEP120Q8N960 986 aa7□□□□□ -1.29
CD44-219ENST00000525685 SSBP4Q9BWG4 385 aaPredicted RBP7□□□□□ -1.29
CD44-219ENST00000525685 RASSF4Q9H2L5 321 aa7□□□□□ -1.29
CD44-219ENST00000525685 SRA1Q9HD15 236 aaKnown RBP7□□□□□ -1.29
CD44-219ENST00000525685 POLIQ9UNA4 740 aa7□□□□□ -1.29
CD44-219ENST00000525685 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7□□□□□ -1.29
CD44-219ENST00000525685 DYRK3O43781 588 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 SMNDC1O75940 238 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-219ENST00000525685 FKBP4Q02790 459 aaKnown RBP eCLIP6.99□□□□□ -1.29
CD44-219ENST00000525685 SF3B2Q13435 895 aaKnown RBP6.99□□□□□ -1.29
CD44-219ENST00000525685 C8orf34Q49A92 452 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 ADAMTSL4Q6UY14 1074 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 NCAPG2Q86XI2 1143 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 AEBP1Q8IUX7 1158 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 MAP4K3Q8IVH8 894 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 C1orf127Q8N9H9 656 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 WFDC12Q8WWY7 111 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 PBX4Q9BYU1 374 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 LACRTQ9GZZ8 138 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 MUC3BQ9H195 1237 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 KANSL3Q9P2N6 904 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 SALL4Q9UJQ4 1053 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 PPME1Q9Y570 386 aa6.99□□□□□ -1.29
CD44-219ENST00000525685 NOS3P29474 1203 aa6.98□□□□□ -1.29
CD44-219ENST00000525685 ZNF211Q13398 564 aaPredicted RBP6.98□□□□□ -1.29
CD44-219ENST00000525685 CHRDQ9H2X0 955 aa6.98□□□□□ -1.29
CD44-219ENST00000525685 FZD6O60353 706 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 ABL1P00519 1130 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 H2AFB1P0C5Y9 115 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 H2AFB2P0C5Z0 115 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 CES1P23141 567 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 CDC27P30260 824 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 IREB2P48200 963 aaKnown RBP6.97□□□□□ -1.29
CD44-219ENST00000525685 TTC16Q8NEE8 873 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 TRAIPQ9BWF2 469 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 250.6 ms