RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 PTF1AQ7RTS3 328 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 SYNE4Q8N205 404 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 VGLL2Q8N8G2 317 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 IL25Q9H293 177 aa10.12□□□□□ -0.79
RNF4-220ENST00000513578 CCNL1Q9UK58 526 aaPredicted RBP10.12□□□□□ -0.79
RNF4-220ENST00000513578 NIP7Q9Y221 180 aaKnown RBP eCLIP10.12□□□□□ -0.79
RNF4-220ENST00000513578 NPM3O75607 178 aaKnown RBP10.11□□□□□ -0.79
RNF4-220ENST00000513578 TIMM10P62072 90 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 CCDC152Q4G0S7 254 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 SLC27A3Q5K4L6 730 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 CCDC158Q5M9N0 1113 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 CWC27Q6UX04 472 aaKnown RBP10.11□□□□□ -0.79
RNF4-220ENST00000513578 LDHAL6AQ6ZMR3 332 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 KBTBD3Q8NAB2 608 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 MAP4K1Q92918 833 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 FSD1Q9BTV5 496 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 BCL2L12Q9HB09 334 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 CHMP5Q9NZZ3 219 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 DOCK2Q92608 1830 aa10.11□□□□□ -0.79
RNF4-220ENST00000513578 CCDC171Q6TFL3 1326 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 PDE8BO95263 885 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 CD2BP2O95400 341 aaKnown RBP10.1□□□□□ -0.79
RNF4-220ENST00000513578 FGFR2P21802 821 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 NMIQ13287 307 aaPredicted RBP10.1□□□□□ -0.79
RNF4-220ENST00000513578 NECTIN1Q15223 517 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 LRRFIP1Q32MZ4 808 aaKnown RBP10.1□□□□□ -0.79
RNF4-220ENST00000513578 XAGE2Q96GT9 111 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 NEUROD6Q96NK8 337 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 TM6SF1Q9BZW5 370 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 NYXQ9GZU5 481 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 CNNM1Q9NRU3 951 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 RTCBQ9Y3I0 505 aaKnown RBP10.1□□□□□ -0.79
RNF4-220ENST00000513578 RGPD3A6NKT7 1758 aaPredicted RBP10.1□□□□□ -0.79
RNF4-220ENST00000513578 RGPD4Q7Z3J3 1758 aa10.1□□□□□ -0.79
RNF4-220ENST00000513578 ZBTB22O15209 634 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 IFIT1P09914 478 aaKnown RBP10.09□□□□□ -0.79
RNF4-220ENST00000513578 RBM6P78332 1123 aaKnown RBP10.09□□□□□ -0.79
RNF4-220ENST00000513578 ATP2B3Q16720 1220 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 TSGA10IPQ3SY00 556 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 METTL24Q5JXM2 366 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 USPL1Q5W0Q7 1092 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 KRT27Q7Z3Y8 459 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 HELLSQ9NRZ9 838 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 PAG1Q9NWQ8 432 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 PALD1Q9ULE6 856 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 SNX14Q9Y5W7 946 aa10.09□□□□□ -0.79
RNF4-220ENST00000513578 A0A0D9SFI3 127 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 ZPR1O75312 459 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 SLC34A2O95436 690 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 ZFYP08048 801 aaPredicted RBP10.08□□□□□ -0.8
RNF4-220ENST00000513578 SSFA2P28290 1259 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 PUM3Q15397 648 aaKnown RBP10.08□□□□□ -0.8
RNF4-220ENST00000513578 MCMDC2Q4G0Z9 681 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 LPIN2Q92539 896 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 FAM227BQ96M60 508 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 HMG20BQ9P0W2 317 aa10.08□□□□□ -0.8
RNF4-220ENST00000513578 MYO5AQ9Y4I1 1855 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 GNPATO15228 680 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 TAF5LO75529 589 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 UQCRFS1P1P0C7P4 283 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 HCLS1P14317 486 aaPredicted RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 ARID4AP29374 1257 aaPredicted RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 IGHMBP2P38935 993 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 NEK4P51957 841 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 PTH1RQ03431 593 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 CUL4AQ13619 759 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 NFKBIBQ15653 356 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 TTC39AQ5SRH9 613 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 ZMYM1Q5SVZ6 1142 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 TRAPPC3LQ5T215 181 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 TBC1D9BQ66K14 1250 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 ARHGEF1Q92888 912 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 SETDB2Q96T68 719 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 CDC5LQ99459 802 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 DNAJC2Q99543 621 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 ALDH8A1Q9H2A2 487 aaPredicted RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 SLKQ9H2G2 1235 aaPredicted RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 CWC22Q9HCG8 908 aaKnown RBP10.07□□□□□ -0.8
RNF4-220ENST00000513578 LAMA4Q16363 1823 aa10.07□□□□□ -0.8
RNF4-220ENST00000513578 TAF1P21675 1872 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 RNF113AO15541 343 aaKnown RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 ADORA1P30542 326 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 TTF1Q15361 905 aaPredicted RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 ERFEQ4G0M1 354 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 FAM182BQ5T319 152 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 GORABQ5T7V8 394 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 RNF20Q5VTR2 975 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 TPTE2Q6XPS3 522 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 EDC3Q96F86 508 aaKnown RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 INTS4Q96HW7 963 aaKnown RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 TTC14Q96N46 770 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 CCDC85AQ96PX6 553 aaPredicted RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 MPHOSPH8Q99549 860 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 ZSWIM6Q9HCJ5 1215 aa10.06□□□□□ -0.8
RNF4-220ENST00000513578 RBM8AQ9Y5S9 174 aaKnown RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 U3KPZ7 1027 aaPredicted RBP10.06□□□□□ -0.8
RNF4-220ENST00000513578 RPAP1Q9BWH6 1393 aaPredicted RBP10.05□□□□□ -0.8
RNF4-220ENST00000513578 GOLIM4O00461 696 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 PLSCR1O15162 318 aa10.05□□□□□ -0.8
RNF4-220ENST00000513578 SLC5A1P13866 664 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms