RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 MCTP1Q6DN14 999 aa19.35■□□□□ 0.69
SQSTM1-213ENST00000510187 CCDC85AQ96PX6 553 aaPredicted RBP19.35■□□□□ 0.69
SQSTM1-213ENST00000510187 LMBRD1Q9NUN5 540 aa19.35■□□□□ 0.69
SQSTM1-213ENST00000510187 CSF1RP07333 972 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 NEK4P51957 841 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 TSHZ3Q63HK5 1081 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 ZGPATQ8N5A5 531 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 TTLL11Q8NHH1 800 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 RILPL2Q969X0 211 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 KIF1BPQ96EK5 621 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 TMX3Q96JJ7 454 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 PA2G4Q9UQ80 394 aaKnown RBP19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 CLCN1P35523 988 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 KLHDC4Q8TBB5 520 aa19.34■□□□□ 0.69
SQSTM1-213ENST00000510187 RFX5P48382 616 aaPredicted RBP19.33■□□□□ 0.68
SQSTM1-213ENST00000510187 CCDC57Q2TAC2 916 aa19.33■□□□□ 0.68
SQSTM1-213ENST00000510187 ANO2Q9NQ90 1003 aa19.33■□□□□ 0.68
SQSTM1-213ENST00000510187 OS9Q13438 667 aaPredicted RBP19.32■□□□□ 0.68
SQSTM1-213ENST00000510187 CNBD1Q8NA66 436 aa19.32■□□□□ 0.68
SQSTM1-213ENST00000510187 RHPN1Q8TCX5 695 aa19.32■□□□□ 0.68
SQSTM1-213ENST00000510187 ABCC12Q96J65 1359 aa19.32■□□□□ 0.68
SQSTM1-213ENST00000510187 POLRMTO00411 1230 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 SERPINB2P05120 415 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 PTPN12Q05209 780 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 DDR1Q08345 913 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 IFIT5Q13325 482 aaKnown RBP19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 SLC10A5Q5PT55 438 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 MSL1Q68DK7 614 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 CCDC24Q8N4L8 307 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 SIL1Q9H173 461 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 GREM2Q9H772 168 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 COPRSQ9NQ92 184 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 ZDHHC9Q9Y397 364 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 QSER1Q2KHR3 1735 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 CCDC173Q0VFZ6 552 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 PKP1Q13835 747 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 PI4K2BQ8TCG2 481 aa19.31■□□□□ 0.68
SQSTM1-213ENST00000510187 AK9Q5TCS8 1911 aa19.3■□□□□ 0.68
SQSTM1-213ENST00000510187 ITGA6P23229 1130 aa19.3■□□□□ 0.68
SQSTM1-213ENST00000510187 G3BP1Q13283 466 aaKnown RBP eCLIP19.3■□□□□ 0.682e-7■□□□□ 10.8
SQSTM1-213ENST00000510187 CCDC152Q4G0S7 254 aa19.3■□□□□ 0.68
SQSTM1-213ENST00000510187 DDX60Q8IY21 1712 aaKnown RBP19.3■□□□□ 0.68
SQSTM1-213ENST00000510187 HSPA4P34932 840 aa19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 PRR5LQ6MZQ0 368 aa19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 ZNF594Q96JF6 807 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 PPP1R9BQ96SB3 815 aa19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 PDGFDQ9GZP0 370 aaPredicted RBP19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 PALD1Q9ULE6 856 aa19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 TTC41PQ6P2S7 1318 aa19.29■□□□□ 0.68
SQSTM1-213ENST00000510187 ANKRD18BA2A2Z9 1011 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 BRD1O95696 1058 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 MMP10P09238 476 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 NASPP49321 788 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 ST5P78524 1137 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 TAF7LQ5H9L4 462 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 ERC1Q8IUD2 1116 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 CNTROBQ8N137 903 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 NLRP3Q96P20 1036 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 IL1RAPL2Q9NP60 686 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 MYH3P11055 1940 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 RAD50Q92878 1312 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 LAMB2P55268 1798 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 ZSCAN23Q3MJ62 389 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 C3orf67Q6ZVT6 689 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 ILDR2Q71H61 639 aa19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 ANP32BQ92688 251 aaKnown RBP19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 TRIM44Q96DX7 344 aaPredicted RBP19.28■□□□□ 0.68
SQSTM1-213ENST00000510187 SGSM2O43147 1006 aa19.27■□□□□ 0.68
SQSTM1-213ENST00000510187 MBD3O95983 291 aa19.27■□□□□ 0.68
SQSTM1-213ENST00000510187 SF3B3Q15393 1217 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-213ENST00000510187 PARP3Q9Y6F1 533 aa19.27■□□□□ 0.68
SQSTM1-213ENST00000510187 ESPNB1AK53 854 aa19.26■□□□□ 0.67
SQSTM1-213ENST00000510187 CAVIN1Q6NZI2 390 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 RTL9Q8NET4 1388 aa19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 EYA2O00167 538 aa19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 GLRX3O76003 335 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 SASH1O94885 1247 aa19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 SEC31BQ9NQW1 1179 aa19.25■□□□□ 0.67
SQSTM1-213ENST00000510187 PRPF40AO75400 957 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-213ENST00000510187 LRRC24Q50LG9 513 aa19.24■□□□□ 0.67
SQSTM1-213ENST00000510187 SLC16A10Q8TF71 515 aa19.24■□□□□ 0.67
SQSTM1-213ENST00000510187 CIAO1O76071 339 aa19.23■□□□□ 0.67
SQSTM1-213ENST00000510187 LDHAL6AQ6ZMR3 332 aa19.23■□□□□ 0.67
SQSTM1-213ENST00000510187 GPT2Q8TD30 523 aa19.23■□□□□ 0.67
SQSTM1-213ENST00000510187 PUS3Q9BZE2 481 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-213ENST00000510187 FBXO3Q9UK99 471 aa19.23■□□□□ 0.67
SQSTM1-213ENST00000510187 IL15P40933 162 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 ATG9AQ7Z3C6 839 aa19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 GPATCH3Q96I76 525 aa19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 LSG1Q9H089 658 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 RIC1Q4ADV7 1423 aa19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 NCLP19338 710 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 R3HDM1Q15032 1099 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 CLASRPQ8N2M8 674 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 CDC5LQ99459 802 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 CNNM1Q9NRU3 951 aa19.22■□□□□ 0.67
SQSTM1-213ENST00000510187 IGHMBP2P38935 993 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-213ENST00000510187 TFCP2Q12800 502 aa19.21■□□□□ 0.67
SQSTM1-213ENST00000510187 RUFY2Q8WXA3 655 aa19.21■□□□□ 0.67
SQSTM1-213ENST00000510187 MPHOSPH8Q99549 860 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms