RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SRP68Q9UHB9 627 aaKnown RBP10.24□□□□□ -0.77
SF3A1-210ENST00000498259 SCN7AQ01118 1682 aa10.24□□□□□ -0.77
SF3A1-210ENST00000498259 TAF1LQ8IZX4 1826 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 GYS1P13807 737 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 CHMLP26374 656 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RBM25P49756 843 aaKnown RBP10.23□□□□□ -0.77
SF3A1-210ENST00000498259 NFIXQ14938 502 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 ZSCAN25Q6NSZ9 544 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 TMC4Q7Z404 712 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 SYNE4Q8N205 404 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 PROM2Q8N271 834 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 AKT1S1Q96B36 256 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 ZNF512BQ96KM6 892 aaPredicted RBP10.23□□□□□ -0.77
SF3A1-210ENST00000498259 HAUS7Q99871 368 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 FSD1Q9BTV5 496 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 GNL3LQ9NVN8 582 aaKnown RBP10.23□□□□□ -0.77
SF3A1-210ENST00000498259 DBNLQ9UJU6 430 aaKnown RBP10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RAD50Q92878 1312 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RGPD3A6NKT7 1758 aaPredicted RBP10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RGPD4Q7Z3J3 1758 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RFX7Q2KHR2 1363 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 RIC1Q4ADV7 1423 aa10.23□□□□□ -0.77
SF3A1-210ENST00000498259 SERPINB2P05120 415 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 ZFYP08048 801 aaPredicted RBP10.22□□□□□ -0.77
SF3A1-210ENST00000498259 TM4SF1P30408 202 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 TIMM10P62072 90 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 RPS8P62241 208 aaKnown RBP10.22□□□□□ -0.77
SF3A1-210ENST00000498259 MAPK8IP2Q13387 824 aaPredicted RBP10.22□□□□□ -0.77
SF3A1-210ENST00000498259 CAVIN4Q5BKX8 364 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 XAGE2Q96GT9 111 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 RBM17Q96I25 401 aaKnown RBP10.22□□□□□ -0.77
SF3A1-210ENST00000498259 ESYT1Q9BSJ8 1104 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.22□□□□□ -0.77
SF3A1-210ENST00000498259 BOLA2Q9H3K6 86 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 PARP3Q9Y6F1 533 aa10.22□□□□□ -0.77
SF3A1-210ENST00000498259 MYH3P11055 1940 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 IGSF3O75054 1194 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 BBOX1O75936 387 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 PDE6BP35913 854 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 KCNJ4P48050 445 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 UBE4AQ14139 1066 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 TSHZ3Q63HK5 1081 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 DBNDD2Q9BQY9 259 aa10.21□□□□□ -0.77
SF3A1-210ENST00000498259 PUS3Q9BZE2 481 aaKnown RBP10.21□□□□□ -0.77
SF3A1-210ENST00000498259 ZNF609O15014 1411 aa10.21□□□□□ -0.78
SF3A1-210ENST00000498259 SEC24BO95487 1268 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 ANAPC15P60006 121 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 SLC15A2Q16348 729 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 TMED8Q6PL24 325 aaPredicted RBP10.2□□□□□ -0.78
SF3A1-210ENST00000498259 ERICH6Q7L0X2 663 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 VPS37DQ86XT2 251 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 KBTBD3Q8NAB2 608 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 CAMKK2Q96RR4 588 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 BRIP1Q9BX63 1249 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 ANO2Q9NQ90 1003 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 PAG1Q9NWQ8 432 aa10.2□□□□□ -0.78
SF3A1-210ENST00000498259 ALDH1B1P30837 517 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 FKBP4Q02790 459 aaKnown RBP eCLIP10.19□□□□□ -0.78
SF3A1-210ENST00000498259 CHRNDQ07001 517 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 GRAPQ13588 217 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 RABEP1Q15276 862 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 RNF20Q5VTR2 975 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 PRR5LQ6MZQ0 368 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 GRAPLQ8TC17 118 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-210ENST00000498259 SLC16A10Q8TF71 515 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 DNAJC2Q99543 621 aaKnown RBP10.19□□□□□ -0.78
SF3A1-210ENST00000498259 USP26Q9BXU7 913 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 SEC31BQ9NQW1 1179 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 TLR7Q9NYK1 1049 aaKnown RBP10.19□□□□□ -0.78
SF3A1-210ENST00000498259 LAMB2P55268 1798 aa10.19□□□□□ -0.78
SF3A1-210ENST00000498259 POLRMTO00411 1230 aaKnown RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 SEMA3EO15041 775 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 SGSM2O43147 1006 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 ST18O60284 1047 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 MAP4K4O95819 1239 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 ZKSCAN1P17029 563 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 EN1Q05925 392 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 CRY2Q49AN0 593 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 CWC27Q6UX04 472 aaKnown RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 COL23A1Q86Y22 540 aaPredicted RBP10.18□□□□□ -0.78
SF3A1-210ENST00000498259 VGLL2Q8N8G2 317 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 CRAMP1Q96RY5 1269 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 HELLSQ9NRZ9 838 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 LEMD3Q9Y2U8 911 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 UBR3Q6ZT12 1888 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 COL24A1Q17RW2 1714 aa10.18□□□□□ -0.78
SF3A1-210ENST00000498259 GOLIM4O00461 696 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 FGFR2P21802 821 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 ARID4AP29374 1257 aaPredicted RBP10.17□□□□□ -0.78
SF3A1-210ENST00000498259 HOXA10P31260 410 aaPredicted RBP10.17□□□□□ -0.78
SF3A1-210ENST00000498259 MCM2P49736 904 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 EZH2Q15910 746 aaKnown RBP10.17□□□□□ -0.78
SF3A1-210ENST00000498259 ZNF827Q17R98 1081 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 MCMDC2Q4G0Z9 681 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 CCDC102BQ68D86 513 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 AMIGO3Q86WK7 504 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 HSCBQ8IWL3 235 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 ANKIB1Q9P2G1 1089 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 MINPP1Q9UNW1 487 aa10.17□□□□□ -0.78
SF3A1-210ENST00000498259 C4AP0C0L4 1744 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms