RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PAX4O43316 350 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 LILRB5O75023 590 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 MAP3K6O95382 1288 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 PDIA4P13667 645 aaKnown RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 MZF1P28698 734 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 USP5P45974 858 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 SERPINB4P48594 390 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 DGKGP49619 791 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 EHHADHQ08426 723 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 PHLDB3Q6NSJ2 640 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 ELMSAN1Q6PJG2 1045 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 FAM35AQ86V20 835 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 ZNF417Q8TAU3 575 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 TMC1Q8TDI8 760 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 ZNF587Q96SQ5 575 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 TLR7Q9NYK1 1049 aaKnown RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 BIN2Q9UBW5 565 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-208ENST00000490788 BRPF3Q9ULD4 1205 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 SLC6A14Q9UN76 642 aa3.99□□□□□ -1.77
HMGB1-208ENST00000490788 FAM177BA6PVY3 158 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 NDUFB5O43674 189 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 ICMTO60725 284 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 RGS9O75916 674 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 CPB1P15086 417 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 EIF2AK2P19525 551 aaKnown RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 NRLP54845 237 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 GPLD1P80108 840 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 MLLT1Q03111 559 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 PDE12Q6L8Q7 609 aaKnown RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 PSAPL1Q6NUJ1 521 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 NUDT8Q8WV74 236 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 NSUN5Q96P11 429 aaKnown RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 FMNL2Q96PY5 1086 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 SEMA6BQ9H3T3 888 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 JPH1Q9HDC5 661 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 ABI2Q9NYB9 513 aaPredicted RBP3.98□□□□□ -1.77
HMGB1-208ENST00000490788 KCNMB2Q9Y691 235 aa3.98□□□□□ -1.77
HMGB1-208ENST00000490788 MMP20O60882 483 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 PDGFAP04085 211 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 GRNP28799 593 aaKnown RBP3.97□□□□□ -1.77
HMGB1-208ENST00000490788 SOX18P35713 384 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 CHRNA4P43681 627 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 HYAL2Q12891 473 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 TRIP4Q15650 581 aaPredicted RBP3.97□□□□□ -1.77
HMGB1-208ENST00000490788 PRRT3Q5FWE3 981 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 FAM26DQ5JW98 314 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 HFE2Q6ZVN8 426 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 NCAPG2Q86XI2 1143 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 TRPM4Q8TD43 1214 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 ELP3Q9H9T3 547 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 ZFATQ9P243 1243 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 POLIQ9UNA4 740 aa3.97□□□□□ -1.77
HMGB1-208ENST00000490788 LOC102724428A0A0B4J2F2 783 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 ALBP02768 609 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 NEFLP07196 543 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 SPATA31C1P0DKV0 1188 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 NPR3P17342 541 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 CES1P23141 567 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 GATA4P43694 442 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 SIK1P57059 783 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 KCNA1Q09470 495 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 PDE3BQ13370 1112 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 TRAPPC3LQ5T215 181 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 TXNDC2Q86VQ3 553 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 PMEPA1Q969W9 287 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 PLVAPQ9BX97 442 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 FRRS1LQ9P0K9 344 aa3.96□□□□□ -1.78
HMGB1-208ENST00000490788 J3QW42 95 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 PHACTR2O75167 634 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 SMNDC1O75940 238 aaKnown RBP eCLIP3.95□□□□□ -1.78
HMGB1-208ENST00000490788 RAC1P63000 192 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 TRIM28Q13263 835 aaKnown RBP3.95□□□□□ -1.78
HMGB1-208ENST00000490788 DOC2BQ14184 412 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 MCTP1Q6DN14 999 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 AEBP1Q8IUX7 1158 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 OR13H1Q8NG92 308 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 TRAIPQ9BWF2 469 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 SMG9Q9H0W8 520 aaKnown RBP3.95□□□□□ -1.78
HMGB1-208ENST00000490788 PRDM6Q9NQX0 595 aa3.95□□□□□ -1.78
HMGB1-208ENST00000490788 SOWAHDA6NJG2 315 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 ZBTB42B2RXF5 422 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 APBA3O96018 575 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 PERM1Q5SV97 790 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 GDF6Q6KF10 455 aaPredicted RBP3.94□□□□□ -1.78
HMGB1-208ENST00000490788 XKR5Q6UX68 686 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 C8orf86Q6ZUL3 223 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 WFDC8Q8IUA0 241 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 SNX29Q8TEQ0 813 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 PLD4Q96BZ4 506 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 MDFIQ99750 246 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 GGNBP2Q9H3C7 697 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 CCDC87Q9NVE4 849 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 TMEM63CQ9P1W3 806 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 GNEQ9Y223 722 aaKnown RBP3.94□□□□□ -1.78
HMGB1-208ENST00000490788 STARD13Q9Y3M8 1113 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 IVNS1ABPQ9Y6Y0 642 aa3.94□□□□□ -1.78
HMGB1-208ENST00000490788 A6NHS1 94 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 FZD6O60353 706 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 EDN3P14138 238 aa3.93□□□□□ -1.78
HMGB1-208ENST00000490788 AFF1P51825 1210 aaKnown RBP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms