RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NRG1Q02297 640 aaPredicted RBP6.54□□□□□ -1.36
CPSF3-205ENST00000489629 COL13A1Q5TAT6 717 aaPredicted RBP6.54□□□□□ -1.36
CPSF3-205ENST00000489629 GPR152Q8TDT2 470 aa6.54□□□□□ -1.36
CPSF3-205ENST00000489629 SSBP4Q9BWG4 385 aaPredicted RBP6.54□□□□□ -1.36
CPSF3-205ENST00000489629 DYRK3O43781 588 aa6.53□□□□□ -1.36
CPSF3-205ENST00000489629 PPP1R15AO75807 674 aaPredicted RBP6.53□□□□□ -1.36
CPSF3-205ENST00000489629 GHRHP01286 108 aa6.53□□□□□ -1.36
CPSF3-205ENST00000489629 SCNN1AP37088 669 aa6.53□□□□□ -1.36
CPSF3-205ENST00000489629 SSFA2P28290 1259 aa6.52□□□□□ -1.37
CPSF3-205ENST00000489629 HELQQ8TDG4 1101 aa6.52□□□□□ -1.37
CPSF3-205ENST00000489629 FNDC3AQ9Y2H6 1198 aaKnown RBP6.52□□□□□ -1.37
CPSF3-205ENST00000489629 DLL1O00548 723 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 KIF4AO95239 1232 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 XP32Q5T750 250 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 IGF2-ASQ6U949 168 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 ATCAYQ86WG3 371 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 RBSNQ9H1K0 784 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 USP21Q9UK80 565 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 TRIM33Q9UPN9 1127 aa6.51□□□□□ -1.37
CPSF3-205ENST00000489629 H2AFB1P0C5Y9 115 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 H2AFB2P0C5Z0 115 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 HYAL2Q12891 473 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 TTC39BQ5VTQ0 682 aaPredicted RBP6.5□□□□□ -1.37
CPSF3-205ENST00000489629 GDF6Q6KF10 455 aaPredicted RBP6.5□□□□□ -1.37
CPSF3-205ENST00000489629 Q8N3U1 123 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 IL22RA1Q8N6P7 574 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 WFDC12Q8WWY7 111 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 NUDT16Q96DE0 195 aaKnown RBP6.5□□□□□ -1.37
CPSF3-205ENST00000489629 TMEM63CQ9P1W3 806 aa6.5□□□□□ -1.37
CPSF3-205ENST00000489629 CYP2E1P05181 493 aaPredicted RBP6.49□□□□□ -1.37
CPSF3-205ENST00000489629 NOS3P29474 1203 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 ATP11AP98196 1134 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 SETDB1Q15047 1291 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 FOXD4L6Q3SYB3 417 aaPredicted RBP6.49□□□□□ -1.37
CPSF3-205ENST00000489629 PDE12Q6L8Q7 609 aaKnown RBP6.49□□□□□ -1.37
CPSF3-205ENST00000489629 PHLDB3Q6NSJ2 640 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 XKR5Q6UX68 686 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 ADAMTSL4Q6UY14 1074 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 FOXD4L3Q6VB84 417 aaPredicted RBP6.49□□□□□ -1.37
CPSF3-205ENST00000489629 CACTIN-AS1Q8N1I8 211 aa6.49□□□□□ -1.37
CPSF3-205ENST00000489629 ABI2Q9NYB9 513 aaPredicted RBP6.49□□□□□ -1.37
CPSF3-205ENST00000489629 IREB2P48200 963 aaKnown RBP6.48□□□□□ -1.37
CPSF3-205ENST00000489629 CEP120Q8N960 986 aa6.48□□□□□ -1.37
CPSF3-205ENST00000489629 GTF3C2Q8WUA4 911 aaPredicted RBP6.48□□□□□ -1.37
CPSF3-205ENST00000489629 EDEM1Q92611 657 aa6.48□□□□□ -1.37
CPSF3-205ENST00000489629 GGNBP2Q9H3C7 697 aa6.48□□□□□ -1.37
CPSF3-205ENST00000489629 ELP3Q9H9T3 547 aa6.48□□□□□ -1.37
CPSF3-205ENST00000489629 SRA1Q9HD15 236 aaKnown RBP6.48□□□□□ -1.37
CPSF3-205ENST00000489629 CNTN3Q9P232 1028 aa6.48□□□□□ -1.37
CPSF3-205ENST00000489629 CARNS1A5YM72 827 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 TM4SF5O14894 197 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 PDGFAP04085 211 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 NPR3P17342 541 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 MPSTP25325 297 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 NOM1Q5C9Z4 860 aaKnown RBP6.47□□□□□ -1.37
CPSF3-205ENST00000489629 PRSS36Q5K4E3 855 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 MAP4K3Q8IVH8 894 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 TMEM130Q8N3G9 435 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 TP53INP1Q96A56 240 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 MEGF10Q96KG7 1140 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 RASSF4Q9H2L5 321 aa6.47□□□□□ -1.37
CPSF3-205ENST00000489629 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.47□□□□□ -1.37
CPSF3-205ENST00000489629 RPLP1P05386 114 aaKnown RBP6.46□□□□□ -1.38
CPSF3-205ENST00000489629 EIF1AXP47813 144 aaKnown RBP6.46□□□□□ -1.38
CPSF3-205ENST00000489629 ZMYM1Q5SVZ6 1142 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 CEP135Q66GS9 1140 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 ZNF438Q7Z4V0 828 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 SPACA7Q96KW9 195 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 PBX4Q9BYU1 374 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 MUC3BQ9H195 1237 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 SALL4Q9UJQ4 1053 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 PPME1Q9Y570 386 aa6.46□□□□□ -1.38
CPSF3-205ENST00000489629 A6NHS1 94 aa6.45□□□□□ -1.38
CPSF3-205ENST00000489629 F8W735 103 aaPredicted RBP6.45□□□□□ -1.38
CPSF3-205ENST00000489629 MZF1P28698 734 aaPredicted RBP6.45□□□□□ -1.38
CPSF3-205ENST00000489629 DNM1Q05193 864 aaKnown RBP6.45□□□□□ -1.38
CPSF3-205ENST00000489629 MTMR3Q13615 1198 aa6.45□□□□□ -1.38
CPSF3-205ENST00000489629 C14orf37Q86TY3 774 aa6.45□□□□□ -1.38
CPSF3-205ENST00000489629 DZIP1LQ8IYY4 767 aaKnown RBP6.45□□□□□ -1.38
CPSF3-205ENST00000489629 C1orf127Q8N9H9 656 aa6.45□□□□□ -1.38
CPSF3-205ENST00000489629 GALNT11Q8NCW6 608 aa6.45□□□□□ -1.38
CPSF3-205ENST00000489629 MRPL18Q9H0U6 180 aaKnown RBP6.45□□□□□ -1.38
CPSF3-205ENST00000489629 LINC01387J3KSC0 135 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 NFKBIEO00221 500 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 SMNDC1O75940 238 aaKnown RBP eCLIP6.44□□□□□ -1.38
CPSF3-205ENST00000489629 ALX3O95076 343 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 CDC27P30260 824 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 ADAM19Q9H013 955 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 CHRDQ9H2X0 955 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 AKTIPQ9H8T0 292 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 KANSL3Q9P2N6 904 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 POLIQ9UNA4 740 aa6.44□□□□□ -1.38
CPSF3-205ENST00000489629 ALKBH2Q6NS38 261 aa6.43□□□□□ -1.38
CPSF3-205ENST00000489629 Q6ZS46 218 aa6.43□□□□□ -1.38
CPSF3-205ENST00000489629 NCAPG2Q86XI2 1143 aa6.43□□□□□ -1.38
CPSF3-205ENST00000489629 DCAF11Q8TEB1 546 aa6.43□□□□□ -1.38
CPSF3-205ENST00000489629 POP1Q99575 1024 aaKnown RBP6.43□□□□□ -1.38
CPSF3-205ENST00000489629 LACRTQ9GZZ8 138 aa6.43□□□□□ -1.38
CPSF3-205ENST00000489629 ACPPP15309 386 aa6.42□□□□□ -1.38
CPSF3-205ENST00000489629 PCSK2P16519 638 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms