RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 ORC3Q9UBD5 711 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-218ENST00000482171 SLC12A7Q9Y666 1083 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 KLF18A0A0U1RQI7 1052 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 TTF1Q15361 905 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-218ENST00000482171 WWC3Q9ULE0 1092 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 CCDC171Q6TFL3 1326 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 GOLGA8AA7E2F4 631 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 CYP7A1P22680 504 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 TMEM67Q5HYA8 995 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 GAS2L3Q86XJ1 694 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 NAT10Q9H0A0 1025 aaKnown RBP13.17□□□□□ -0.3
SMPD4-218ENST00000482171 CNPY2Q9Y2B0 182 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 SETBP1Q9Y6X0 1596 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 UNC5CLQ8IV45 518 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 PDILTQ8N807 584 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 GNPATO15228 680 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 SGSM2O43147 1006 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 TAF5LO75529 589 aa13.17□□□□□ -0.3
SMPD4-218ENST00000482171 MAP3K11Q16584 847 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 FAM177A1Q8N128 213 aaPredicted RBP13.16□□□□□ -0.3
SMPD4-218ENST00000482171 NCOA7Q8NI08 942 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 PRIMPOLQ96LW4 560 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 UQCRFS1P1P0C7P4 283 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 BRPF1P55201 1214 aaPredicted RBP13.16□□□□□ -0.3
SMPD4-218ENST00000482171 BRINP3Q76B58 766 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 SCAND2PQ9GZW5 306 aaPredicted RBP13.16□□□□□ -0.3
SMPD4-218ENST00000482171 PNPLA6Q8IY17 1366 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 TNNT1P13805 278 aa13.16□□□□□ -0.3
SMPD4-218ENST00000482171 TSR1Q2NL82 804 aaKnown RBP13.16□□□□□ -0.3
SMPD4-218ENST00000482171 CCDC47Q96A33 483 aaKnown RBP13.16□□□□□ -0.3
SMPD4-218ENST00000482171 PIK3C2BO00750 1634 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 ZSCAN22P10073 491 aaPredicted RBP13.15□□□□□ -0.3
SMPD4-218ENST00000482171 KCNQ4P56696 695 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 FAM182BQ5T319 152 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 SH3TC1Q8TE82 1336 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 TPM1P09493 284 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 RXRAP19793 462 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 DNM1Q05193 864 aaKnown RBP13.15□□□□□ -0.3
SMPD4-218ENST00000482171 PDE4CQ08493 712 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 APOBRQ0VD83 1088 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 GIMAP6Q6P9H5 292 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 MFSD6Q6ZSS7 791 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 IQCA1Q86XH1 822 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 PALD1Q9ULE6 856 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 ERVV-2B6SEH9 535 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 RNF113AO15541 343 aaKnown RBP13.15□□□□□ -0.3
SMPD4-218ENST00000482171 PDIA4P13667 645 aaKnown RBP13.15□□□□□ -0.3
SMPD4-218ENST00000482171 RTCBQ9Y3I0 505 aaKnown RBP13.15□□□□□ -0.3
SMPD4-218ENST00000482171 SLC4A4Q9Y6R1 1079 aa13.15□□□□□ -0.3
SMPD4-218ENST00000482171 CYP27B1O15528 508 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 SKIDA1Q1XH10 827 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 ANKRD20A12PQ8NF67 263 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 NOL7Q9UMY1 257 aaKnown RBP13.14□□□□□ -0.31
SMPD4-218ENST00000482171 ZFYP08048 801 aaPredicted RBP13.14□□□□□ -0.31
SMPD4-218ENST00000482171 HS1BP3Q53T59 392 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 XAGE2Q96GT9 111 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 TCEAL9Q9UHQ7 104 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 SNX14Q9Y5W7 946 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 LRRC7Q96NW7 1537 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 MPHOSPH10O00566 681 aaKnown RBP13.14□□□□□ -0.31
SMPD4-218ENST00000482171 MAGEB6Q8N7X4 407 aa13.14□□□□□ -0.31
SMPD4-218ENST00000482171 NSFL1CQ9UNZ2 370 aaKnown RBP13.14□□□□□ -0.31
SMPD4-218ENST00000482171 F8W031 263 aaPredicted RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 METAP2P50579 478 aaKnown RBP eCLIP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 NOC3LQ8WTT2 800 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 CPSF1Q10570 1443 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 FSD2A1L4K1 749 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 TCIRG1Q13488 830 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 USP48Q86UV5 1035 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 ZNF622Q969S3 477 aaKnown RBP eCLIP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 SLC26A6Q9BXS9 759 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 TRMT1Q9NXH9 659 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 KIF24Q5T7B8 1368 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 PTPN14Q15678 1187 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 LRRC24Q50LG9 513 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 HSP90B2PQ58FF3 399 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 FAM173BQ6P4H8 233 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 CTCFLQ8NI51 663 aaPredicted RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 SEC62Q99442 399 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 TLR7Q9NYK1 1049 aaKnown RBP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.13□□□□□ -0.31
SMPD4-218ENST00000482171 ADAMTS13Q76LX8 1427 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 CPS1P31327 1500 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 TPTE2Q6XPS3 522 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 KDRP35968 1356 aa13.13□□□□□ -0.31
SMPD4-218ENST00000482171 WDR17Q8IZU2 1322 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 PRC1O43663 620 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 TTLL5Q6EMB2 1281 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 CCDC94Q9BW85 323 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-218ENST00000482171 RNF41Q9H4P4 317 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-218ENST00000482171 TSPY2A6NKD2 308 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 SOGA3Q5TF21 947 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 ZNF444Q8N0Y2 327 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-218ENST00000482171 CCNL1Q9UK58 526 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-218ENST00000482171 IBTKQ9P2D0 1353 aaPredicted RBP13.12□□□□□ -0.31
SMPD4-218ENST00000482171 BIN1O00499 593 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 RUFY3Q7L099 469 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 FSIP1Q8NA03 581 aa13.12□□□□□ -0.31
SMPD4-218ENST00000482171 ANTXR1Q9H6X2 564 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms