RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 CRIPAKQ8N1N5 446 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 PGBD3Q8N328 593 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 CRISPLD1Q9H336 500 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 RUBCNLQ9H714 662 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 RNF19AQ9NV58 838 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 DNMT3LQ9UJW3 386 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 DYRK1BQ9Y463 629 aa8.4□□□□□ -1.06
UPF3A-205ENST00000479712 ERICH3Q5RHP9 1530 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 AXIN1O15169 862 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 F11P03951 625 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 YY1P25490 414 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 DAB2P98082 770 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 TYRO3Q06418 890 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 TRIP4Q15650 581 aaPredicted RBP8.39□□□□□ -1.07
UPF3A-205ENST00000479712 ZNF438Q7Z4V0 828 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 FBF1Q8TES7 1133 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 CEP63Q96MT8 703 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 DNAJC25Q9H1X3 360 aa8.39□□□□□ -1.07
UPF3A-205ENST00000479712 SORBS3O60504 671 aa8.38□□□□□ -1.07
UPF3A-205ENST00000479712 CPNE3O75131 537 aaKnown RBP8.38□□□□□ -1.07
UPF3A-205ENST00000479712 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.38□□□□□ -1.07
UPF3A-205ENST00000479712 PDE12Q6L8Q7 609 aaKnown RBP8.38□□□□□ -1.07
UPF3A-205ENST00000479712 GAS2L1Q99501 681 aaPredicted RBP8.38□□□□□ -1.07
UPF3A-205ENST00000479712 BACH2Q9BYV9 841 aa8.38□□□□□ -1.07
UPF3A-205ENST00000479712 VTI1BQ9UEU0 232 aa8.38□□□□□ -1.07
UPF3A-205ENST00000479712 KCNMB2Q9Y691 235 aa8.38□□□□□ -1.07
UPF3A-205ENST00000479712 ARHGEF12Q9NZN5 1544 aa8.38□□□□□ -1.07
UPF3A-205ENST00000479712 SETD1BQ9UPS6 1966 aaKnown RBP8.37□□□□□ -1.07
UPF3A-205ENST00000479712 TNFRSF21O75509 655 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 NFX1Q12986 1120 aaKnown RBP8.37□□□□□ -1.07
UPF3A-205ENST00000479712 XKR5Q6UX68 686 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 NLRP8Q86W28 1048 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 SNX29Q8TEQ0 813 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 CFHR5Q9BXR6 569 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 GMPR2Q9P2T1 348 aaKnown RBP8.37□□□□□ -1.07
UPF3A-205ENST00000479712 STK17AQ9UEE5 414 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 FOXD3Q9UJU5 478 aaPredicted RBP8.37□□□□□ -1.07
UPF3A-205ENST00000479712 AKNAQ7Z591 1439 aa8.37□□□□□ -1.07
UPF3A-205ENST00000479712 WIPF1O43516 503 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 MAN1A2O60476 641 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 GNA15P30679 374 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 EFHC2Q5JST6 749 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 BRD7Q9NPI1 651 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 PTPRKQ15262 1439 aa8.36□□□□□ -1.07
UPF3A-205ENST00000479712 XYLBO75191 536 aa8.35□□□□□ -1.07
UPF3A-205ENST00000479712 GRNP28799 593 aaKnown RBP8.35□□□□□ -1.07
UPF3A-205ENST00000479712 SAMD5Q5TGI4 173 aa8.35□□□□□ -1.07
UPF3A-205ENST00000479712 ELP3Q9H9T3 547 aa8.35□□□□□ -1.07
UPF3A-205ENST00000479712 TMEM63CQ9P1W3 806 aa8.35□□□□□ -1.07
UPF3A-205ENST00000479712 C11orf95C9JLR9 678 aaPredicted RBP8.34□□□□□ -1.07
UPF3A-205ENST00000479712 SCAMP3O14828 347 aaKnown RBP8.34□□□□□ -1.07
UPF3A-205ENST00000479712 PHACTR2O75167 634 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 TMEM87AQ8NBN3 555 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 FRMD6Q96NE9 622 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 ATP13A2Q9NQ11 1180 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 SPG7Q9UQ90 795 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 CARMIL2Q6F5E8 1435 aa8.34□□□□□ -1.07
UPF3A-205ENST00000479712 LRRC7Q96NW7 1537 aa8.34□□□□□ -1.08
UPF3A-205ENST00000479712 LBRQ14739 615 aaKnown RBP8.33□□□□□ -1.08
UPF3A-205ENST00000479712 USPL1Q5W0Q7 1092 aa8.33□□□□□ -1.08
UPF3A-205ENST00000479712 RIPOR1Q6ZS17 1223 aa8.33□□□□□ -1.08
UPF3A-205ENST00000479712 ZFYVE28Q9HCC9 887 aa8.33□□□□□ -1.08
UPF3A-205ENST00000479712 C3P01024 1663 aa8.33□□□□□ -1.08
UPF3A-205ENST00000479712 EGFRP00533 1210 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 INSM1Q01101 510 aaPredicted RBP8.32□□□□□ -1.08
UPF3A-205ENST00000479712 LDLRAD1Q5T700 205 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 FIGNL1Q6PIW4 674 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 NLRP13Q86W25 1043 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 CCDC74AQ96AQ1 378 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 ZCCHC2Q9C0B9 1178 aaKnown RBP8.32□□□□□ -1.08
UPF3A-205ENST00000479712 C11orf16Q9NQ32 467 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 ZFYVE16Q7Z3T8 1539 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 RICTORQ6R327 1708 aa8.32□□□□□ -1.08
UPF3A-205ENST00000479712 CPS1P31327 1500 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 SOBPA7XYQ1 873 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 ATXN7O15265 892 aaPredicted RBP8.31□□□□□ -1.08
UPF3A-205ENST00000479712 IGSF3O75054 1194 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 FAM157BP0CG42 384 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.31□□□□□ -1.08
UPF3A-205ENST00000479712 NLRP2Q9NX02 1062 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 ABI2Q9NYB9 513 aaPredicted RBP8.31□□□□□ -1.08
UPF3A-205ENST00000479712 KCNH4Q9UQ05 1017 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 AK5Q9Y6K8 562 aa8.31□□□□□ -1.08
UPF3A-205ENST00000479712 EIF4BP23588 611 aaKnown RBP8.3□□□□□ -1.08
UPF3A-205ENST00000479712 IRS1P35568 1242 aa8.3□□□□□ -1.08
UPF3A-205ENST00000479712 KCNQ4P56696 695 aa8.3□□□□□ -1.08
UPF3A-205ENST00000479712 HDLBPQ00341 1268 aaKnown RBP8.3□□□□□ -1.08
UPF3A-205ENST00000479712 PTSQ03393 145 aa8.3□□□□□ -1.08
UPF3A-205ENST00000479712 EPS8L3Q8TE67 593 aaKnown RBP8.3□□□□□ -1.08
UPF3A-205ENST00000479712 CHRDQ9H2X0 955 aa8.3□□□□□ -1.08
UPF3A-205ENST00000479712 PHLDB1Q86UU1 1377 aa8.3□□□□□ -1.08
UPF3A-205ENST00000479712 DCDC2BA2VCK2 349 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 KHNYNO15037 678 aaKnown RBP8.29□□□□□ -1.08
UPF3A-205ENST00000479712 LCE2CQ5TA81 110 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 TTC39BQ5VTQ0 682 aaPredicted RBP8.29□□□□□ -1.08
UPF3A-205ENST00000479712 PI16Q6UXB8 463 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 C1orf127Q8N9H9 656 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 CRELD1Q96HD1 420 aa8.29□□□□□ -1.08
UPF3A-205ENST00000479712 NUCKS1Q9H1E3 243 aaKnown RBP8.29□□□□□ -1.08
UPF3A-205ENST00000479712 NPHS2Q9NP85 383 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms