RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 VIL1P09327 827 aaKnown RBP22.46■■□□□ 1.19
VIM-204ENST00000478746 ANKRD13DQ6ZTN6 518 aa22.46■■□□□ 1.19
VIM-204ENST00000478746 PLBD2Q8NHP8 589 aa22.46■■□□□ 1.19
VIM-204ENST00000478746 TBC1D16Q8TBP0 767 aa22.46■■□□□ 1.19
VIM-204ENST00000478746 ZC3H12CQ9C0D7 883 aaKnown RBP22.46■■□□□ 1.19
VIM-204ENST00000478746 GGA3Q9NZ52 723 aa22.46■■□□□ 1.19
VIM-204ENST00000478746 G3V3G9 751 aa22.45■■□□□ 1.18
VIM-204ENST00000478746 RPS8P62241 208 aaKnown RBP22.45■■□□□ 1.18
VIM-204ENST00000478746 LMOD3Q0VAK6 560 aa22.45■■□□□ 1.18
VIM-204ENST00000478746 DCAF8Q5TAQ9 597 aa22.45■■□□□ 1.18
VIM-204ENST00000478746 CDCA5Q96FF9 252 aa22.45■■□□□ 1.18
VIM-204ENST00000478746 ISCA1Q9BUE6 129 aa22.45■■□□□ 1.18
VIM-204ENST00000478746 ATP5J2-PTCD1G3V325 749 aa22.44■■□□□ 1.18
VIM-204ENST00000478746 TMPOP42166 694 aaKnown RBP22.44■■□□□ 1.18
VIM-204ENST00000478746 RTL5Q5HYW3 569 aaPredicted RBP22.44■■□□□ 1.18
VIM-204ENST00000478746 CHPF2Q9P2E5 772 aa22.44■■□□□ 1.18
VIM-204ENST00000478746 ASTN2O75129 1339 aaPredicted RBP22.43■■□□□ 1.18
VIM-204ENST00000478746 KRT24Q2M2I5 525 aa22.43■■□□□ 1.18
VIM-204ENST00000478746 DDX60Q8IY21 1712 aaKnown RBP22.43■■□□□ 1.18
VIM-204ENST00000478746 SCARF1Q14162 830 aa22.42■■□□□ 1.18
VIM-204ENST00000478746 IRS4O14654 1257 aaPredicted RBP22.41■■□□□ 1.18
VIM-204ENST00000478746 ANGEL2Q5VTE6 544 aaKnown RBP22.41■■□□□ 1.18
VIM-204ENST00000478746 PRPF38BQ5VTL8 546 aaKnown RBP22.41■■□□□ 1.18
VIM-204ENST00000478746 RASAL3Q86YV0 1011 aa22.41■■□□□ 1.18
VIM-204ENST00000478746 LAS1LQ9Y4W2 734 aaKnown RBP22.41■■□□□ 1.18
VIM-204ENST00000478746 CHL1O00533 1208 aa22.4■■□□□ 1.18
VIM-204ENST00000478746 ZNF280AP59817 542 aaPredicted RBP22.4■■□□□ 1.18
VIM-204ENST00000478746 HDGFL1Q5TGJ6 251 aa22.4■■□□□ 1.18
VIM-204ENST00000478746 PODXL2Q9NZ53 605 aa22.4■■□□□ 1.18
VIM-204ENST00000478746 ANKIB1Q9P2G1 1089 aa22.4■■□□□ 1.18
VIM-204ENST00000478746 UFL1O94874 794 aa22.39■■□□□ 1.17
VIM-204ENST00000478746 FKBP1BP68106 108 aa22.39■■□□□ 1.17
VIM-204ENST00000478746 PKN2Q16513 984 aaKnown RBP22.39■■□□□ 1.17
VIM-204ENST00000478746 AGBL3Q8NEM8 1001 aa22.39■■□□□ 1.17
VIM-204ENST00000478746 DBF4Q9UBU7 674 aaPredicted RBP22.39■■□□□ 1.17
VIM-204ENST00000478746 HPS5Q9UPZ3 1129 aa22.39■■□□□ 1.17
VIM-204ENST00000478746 TRIM28Q13263 835 aaKnown RBP22.38■■□□□ 1.17
VIM-204ENST00000478746 NEUROD2Q15784 382 aa22.38■■□□□ 1.17
VIM-204ENST00000478746 RSBN1LQ6PCB5 846 aaPredicted RBP22.38■■□□□ 1.17
VIM-204ENST00000478746 GGA1Q9UJY5 639 aa22.38■■□□□ 1.17
VIM-204ENST00000478746 HDAC9Q9UKV0 1011 aa22.38■■□□□ 1.17
VIM-204ENST00000478746 SCN9AQ15858 1988 aa22.38■■□□□ 1.17
VIM-204ENST00000478746 HYPKQ9NX55 129 aa22.37■■□□□ 1.17
VIM-204ENST00000478746 COL4A1P02462 1669 aa22.36■■□□□ 1.17
VIM-204ENST00000478746 SEC31BQ9NQW1 1179 aa22.36■■□□□ 1.17
VIM-204ENST00000478746 TBC1D8O95759 1140 aa22.35■■□□□ 1.17
VIM-204ENST00000478746 HOXB7P09629 217 aa22.35■■□□□ 1.17
VIM-204ENST00000478746 USP17L8P0C7I0 530 aa22.35■■□□□ 1.17
VIM-204ENST00000478746 HSP90B1P14625 803 aaKnown RBP22.35■■□□□ 1.17
VIM-204ENST00000478746 MYOZ2Q9NPC6 264 aa22.35■■□□□ 1.17
VIM-204ENST00000478746 PITPNM2Q9BZ72 1349 aa22.34■■□□□ 1.17
VIM-204ENST00000478746 UBE2Q2LH0YL09 131 aa22.34■■□□□ 1.17
VIM-204ENST00000478746 MOB2Q70IA6 237 aa22.34■■□□□ 1.17
VIM-204ENST00000478746 ZBTB38Q8NAP3 1195 aaPredicted RBP22.34■■□□□ 1.17
VIM-204ENST00000478746 ZNF296Q8WUU4 475 aaPredicted RBP22.34■■□□□ 1.17
VIM-204ENST00000478746 GMLQ99445 158 aa22.34■■□□□ 1.17
VIM-204ENST00000478746 RIC3Q7Z5B4 369 aa22.33■■□□□ 1.17
VIM-204ENST00000478746 CCDC152Q4G0S7 254 aa22.32■■□□□ 1.16
VIM-204ENST00000478746 SCAF8Q9UPN6 1271 aaKnown RBP22.32■■□□□ 1.16
VIM-204ENST00000478746 ZNF609O15014 1411 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 PAPPA2Q9BXP8 1791 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 USP17L3A6NCW0 530 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 USP17L4A6NCW7 530 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 TM4SF4P48230 202 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 TTLL12Q14166 644 aaPredicted RBP22.31■■□□□ 1.16
VIM-204ENST00000478746 PRAMEF18Q5VWM3 479 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 USP17L1Q7RTZ2 530 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 PODNQ7Z5L7 613 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 CCDC146Q8IYE0 955 aa22.31■■□□□ 1.16
VIM-204ENST00000478746 DUSP27Q5VZP5 1158 aa22.3■■□□□ 1.16
VIM-204ENST00000478746 TRIM35Q9UPQ4 493 aa22.3■■□□□ 1.16
VIM-204ENST00000478746 GPR25O00155 361 aa22.29■■□□□ 1.16
VIM-204ENST00000478746 ATP2B4P23634 1241 aa22.29■■□□□ 1.16
VIM-204ENST00000478746 XDHP47989 1333 aa22.29■■□□□ 1.16
VIM-204ENST00000478746 PDE8AO60658 829 aa22.28■■□□□ 1.16
VIM-204ENST00000478746 GOLGA2Q08379 1002 aa22.28■■□□□ 1.16
VIM-204ENST00000478746 NBPF9Q3BBW0 867 aa22.28■■□□□ 1.16
VIM-204ENST00000478746 NOM1Q5C9Z4 860 aaKnown RBP22.28■■□□□ 1.16
VIM-204ENST00000478746 ANKRD18AQ8IVF6 992 aa22.28■■□□□ 1.16
VIM-204ENST00000478746 CCDC85AQ96PX6 553 aaPredicted RBP22.28■■□□□ 1.16
VIM-204ENST00000478746 PCCAP05165 728 aaPredicted RBP22.27■■□□□ 1.16
VIM-204ENST00000478746 NF2P35240 595 aa22.27■■□□□ 1.16
VIM-204ENST00000478746 FBXO46Q6PJ61 603 aaPredicted RBP22.27■■□□□ 1.16
VIM-204ENST00000478746 CCDC191Q8NCU4 936 aa22.27■■□□□ 1.16
VIM-204ENST00000478746 MYD88Q99836 296 aa22.27■■□□□ 1.16
VIM-204ENST00000478746 MKRN3Q13064 507 aaKnown RBP22.26■■□□□ 1.15
VIM-204ENST00000478746 RALBP1Q15311 655 aa22.26■■□□□ 1.15
VIM-204ENST00000478746 OGFOD1Q8N543 542 aa22.26■■□□□ 1.15
VIM-204ENST00000478746 JARID2Q92833 1246 aaPredicted RBP22.26■■□□□ 1.15
VIM-204ENST00000478746 RUNDC1Q96C34 613 aa22.26■■□□□ 1.15
VIM-204ENST00000478746 PSME4Q14997 1843 aa22.26■■□□□ 1.15
VIM-204ENST00000478746 PHAXQ9H814 394 aaKnown RBP22.25■■□□□ 1.15
VIM-204ENST00000478746 FKTNO75072 461 aa22.24■■□□□ 1.15
VIM-204ENST00000478746 SREBF2Q12772 1141 aa22.24■■□□□ 1.15
VIM-204ENST00000478746 CWC25Q9NXE8 425 aaPredicted RBP22.24■■□□□ 1.15
VIM-204ENST00000478746 WNT10BO00744 389 aa22.23■■□□□ 1.15
VIM-204ENST00000478746 WTIPA6NIX2 430 aaPredicted RBP22.22■■□□□ 1.15
VIM-204ENST00000478746 PTPN12Q05209 780 aaKnown RBP22.22■■□□□ 1.15
VIM-204ENST00000478746 DACT2Q5SW24 774 aa22.22■■□□□ 1.15
VIM-204ENST00000478746 ARMC9Q7Z3E5 817 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms