RNA–Protein interactions for RNA: ENST00000416717.6

SMPD4P1-201, Transcript of sphingomyelin phosphodiesterase 4 pseudogene 1, humanhuman

BASIC

Gene SMPD4P1, Length 2,263 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4P1-201ENST00000416717 IFIT1P09914 478 aaKnown RBP12.9□□□□□ -0.34
SMPD4P1-201ENST00000416717 ATP2B3Q16720 1220 aa12.9□□□□□ -0.34
SMPD4P1-201ENST00000416717 SLFNL1Q499Z3 407 aa12.9□□□□□ -0.34
SMPD4P1-201ENST00000416717 FBXO3Q9UK99 471 aa12.9□□□□□ -0.34
SMPD4P1-201ENST00000416717 RAD50Q92878 1312 aa12.9□□□□□ -0.34
SMPD4P1-201ENST00000416717 SNAP23O00161 211 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 NEK4P51957 841 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 FKBP4Q02790 459 aaKnown RBP eCLIP12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 CCDC152Q4G0S7 254 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 TTC39AQ5SRH9 613 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 NOL8Q76FK4 1167 aaKnown RBP12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 MPHOSPH8Q99549 860 aa12.9□□□□□ -0.35
SMPD4P1-201ENST00000416717 C4AP0C0L4 1744 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 LAMB2P55268 1798 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 HIP1O00291 1037 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 HSPA4P34932 840 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 RFC4P35249 363 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 CCDC158Q5M9N0 1113 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 UPF3BQ9BZI7 483 aaKnown RBP12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 ANTXR1Q9H6X2 564 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 PAG1Q9NWQ8 432 aa12.89□□□□□ -0.35
SMPD4P1-201ENST00000416717 TAF5LO75529 589 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 SCARF1Q14162 830 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 ZNF589Q86UQ0 364 aaPredicted RBP12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 SEC62Q99442 399 aaKnown RBP12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 COL4A1P02462 1669 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 ST18O60284 1047 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 PDE8BO95263 885 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 KCNJ4P48050 445 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 TRAPPC3LQ5T215 181 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 PI16Q6UXB8 463 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 CCDC129Q6ZRS4 1044 aa12.88□□□□□ -0.35
SMPD4P1-201ENST00000416717 MYO5AQ9Y4I1 1855 aaKnown RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 NPHP1O15259 732 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 PRPF40BQ6NWY9 871 aaKnown RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 NBPF5PQ86XG9 351 aaPredicted RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 RASEFQ8IZ41 740 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 VGLL2Q8N8G2 317 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 IGHMBP2P38935 993 aaKnown RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 RBM6P78332 1123 aaKnown RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 NFKBIBQ15653 356 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 ZNF772Q68DY9 489 aaPredicted RBP12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 KBTBD3Q8NAB2 608 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 SNX14Q9Y5W7 946 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 CCDC171Q6TFL3 1326 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 ABCC12Q96J65 1359 aa12.87□□□□□ -0.35
SMPD4P1-201ENST00000416717 AKAP11Q9UKA4 1901 aa12.86□□□□□ -0.35
SMPD4P1-201ENST00000416717 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.86□□□□□ -0.35
SMPD4P1-201ENST00000416717 HSP90B1P14625 803 aaKnown RBP12.86□□□□□ -0.35
SMPD4P1-201ENST00000416717 ANAPC15P60006 121 aa12.86□□□□□ -0.35
SMPD4P1-201ENST00000416717 RBM8AQ9Y5S9 174 aaKnown RBP12.86□□□□□ -0.35
SMPD4P1-201ENST00000416717 UBR3Q6ZT12 1888 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 FRAT2O75474 233 aaPredicted RBP12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 CPA1P15085 419 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 ZAP70P43403 619 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 MED23Q9ULK4 1368 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 MROH5Q6ZUA9 1318 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 PHKA1P46020 1223 aa12.85□□□□□ -0.35
SMPD4P1-201ENST00000416717 LRP5O75197 1615 aa12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 MYH7P12883 1935 aa12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 MCAMP43121 646 aa12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 PUM3Q15397 648 aaKnown RBP12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 LARP6Q9BRS8 491 aaKnown RBP12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 NYXQ9GZU5 481 aa12.84□□□□□ -0.35
SMPD4P1-201ENST00000416717 EPB41L2O43491 1005 aaKnown RBP12.83□□□□□ -0.35
SMPD4P1-201ENST00000416717 ADCK5Q3MIX3 580 aa12.83□□□□□ -0.35
SMPD4P1-201ENST00000416717 CCDC102BQ68D86 513 aa12.83□□□□□ -0.35
SMPD4P1-201ENST00000416717 MAP4K1Q92918 833 aa12.83□□□□□ -0.35
SMPD4P1-201ENST00000416717 CHMP5Q9NZZ3 219 aa12.83□□□□□ -0.35
SMPD4P1-201ENST00000416717 COL24A1Q17RW2 1714 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 WTIPA6NIX2 430 aaPredicted RBP12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 CASTP20810 708 aaKnown RBP12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 CHRNDQ07001 517 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 MCMDC2Q4G0Z9 681 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 CREB3L3Q68CJ9 461 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 TPTE2Q6XPS3 522 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 ANKRD18AQ8IVF6 992 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 PROM2Q8N271 834 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 LPIN2Q92539 896 aa12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 CELF1Q92879 486 aaKnown RBP12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 CDC5LQ99459 802 aaKnown RBP12.83□□□□□ -0.36
SMPD4P1-201ENST00000416717 SLC5A1P13866 664 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 NFIXQ14938 502 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 NECTIN1Q15223 517 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 TXNRD1Q16881 649 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 JAKMIP1Q96N16 626 aaKnown RBP12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 NLRP3Q96P20 1036 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 TAF6LQ9Y6J9 622 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 RNF113AO15541 343 aaKnown RBP12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 APBA3O96018 575 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 FGFR2P21802 821 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 RXRBP28702 533 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 SF3B3Q15393 1217 aaKnown RBP12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 SLC27A3Q5K4L6 730 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 RTL9Q8NET4 1388 aa12.82□□□□□ -0.36
SMPD4P1-201ENST00000416717 SLC27A2O14975 620 aa12.81□□□□□ -0.36
SMPD4P1-201ENST00000416717 WASHC4Q2M389 1173 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms