RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 N4BP2Q86UW6 1770 aaPredicted RBP13.24□□□□□ -0.29
CUX1-204ENST00000393824 GNPATO15228 680 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 HCLS1P14317 486 aaPredicted RBP13.24□□□□□ -0.29
CUX1-204ENST00000393824 TXNRD1Q16881 649 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 EPHA10Q5JZY3 1008 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 OTUD7AQ8TE49 926 aaPredicted RBP13.24□□□□□ -0.29
CUX1-204ENST00000393824 KCNF1Q9H3M0 494 aa13.24□□□□□ -0.29
CUX1-204ENST00000393824 WDR33Q9C0J8 1336 aaKnown RBP13.23□□□□□ -0.29
CUX1-204ENST00000393824 ZNF771Q7L3S4 317 aaPredicted RBP13.23□□□□□ -0.29
CUX1-204ENST00000393824 CTNNA3Q9UI47 895 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 RREB1Q92766 1687 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 COL15A1P39059 1388 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 GRM8O00222 908 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 CAMTA2O94983 1202 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 UBTFL1P0CB47 393 aaPredicted RBP13.23□□□□□ -0.29
CUX1-204ENST00000393824 MCCP23508 829 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 SUCLG2Q96I99 432 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 FUCA2Q9BTY2 467 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 SRP68Q9UHB9 627 aaKnown RBP13.23□□□□□ -0.29
CUX1-204ENST00000393824 PYCARDQ9ULZ3 195 aa13.23□□□□□ -0.29
CUX1-204ENST00000393824 UBN2Q6ZU65 1347 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 CNTNAP4Q9C0A0 1308 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 ALDH1L1O75891 902 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 NCBP1Q09161 790 aaKnown RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 UBE3BQ7Z3V4 1068 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 TEX2Q8IWB9 1127 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 ZFP91Q96JP5 570 aaPredicted RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 C9orf78Q9NZ63 289 aaPredicted RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 CGNQ9P2M7 1197 aaKnown RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 DDX41Q9UJV9 622 aaKnown RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 ZNF831Q5JPB2 1677 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 TAF1LQ8IZX4 1826 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 IGSF3O75054 1194 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 GNAI2P04899 355 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 SLFN14P0C7P3 912 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 CASP7P55210 303 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 NEXNQ0ZGT2 675 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 TCIRG1Q13488 830 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 GIGYF2Q6Y7W6 1299 aaKnown RBP13.22□□□□□ -0.29
CUX1-204ENST00000393824 KIF6Q6ZMV9 814 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 ISCA1Q9BUE6 129 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 GDPD2Q9HCC8 539 aa13.22□□□□□ -0.29
CUX1-204ENST00000393824 GOLGA6L6A8MZA4 724 aa13.21□□□□□ -0.29
CUX1-204ENST00000393824 SMARCA5O60264 1052 aaPredicted RBP13.21□□□□□ -0.29
CUX1-204ENST00000393824 CDK11BP21127 795 aaKnown RBP13.21□□□□□ -0.29
CUX1-204ENST00000393824 PDE1AP54750 535 aa13.21□□□□□ -0.29
CUX1-204ENST00000393824 MORC2Q9Y6X9 1032 aaPredicted RBP13.21□□□□□ -0.29
CUX1-204ENST00000393824 RPAP1Q9BWH6 1393 aaPredicted RBP13.21□□□□□ -0.3
CUX1-204ENST00000393824 A0A087WZG4 1122 aa13.21□□□□□ -0.3
CUX1-204ENST00000393824 UBE2HP62256 183 aa13.21□□□□□ -0.3
CUX1-204ENST00000393824 ZNF827Q17R98 1081 aa13.21□□□□□ -0.3
CUX1-204ENST00000393824 UTYO14607 1347 aa13.2□□□□□ -0.3
CUX1-204ENST00000393824 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
CUX1-204ENST00000393824 GNAI3P08754 354 aa13.2□□□□□ -0.3
CUX1-204ENST00000393824 CHRM1P11229 460 aaPredicted RBP13.2□□□□□ -0.3
CUX1-204ENST00000393824 EN1Q05925 392 aaPredicted RBP13.2□□□□□ -0.3
CUX1-204ENST00000393824 DEFB132Q7Z7B7 95 aa13.2□□□□□ -0.3
CUX1-204ENST00000393824 ARHGEF1Q92888 912 aaKnown RBP13.2□□□□□ -0.3
CUX1-204ENST00000393824 FAM89AQ96GI7 184 aa13.2□□□□□ -0.3
CUX1-204ENST00000393824 BICC1Q9H694 974 aaKnown RBP13.2□□□□□ -0.3
CUX1-204ENST00000393824 TNS1Q9HBL0 1735 aaKnown RBP13.2□□□□□ -0.3
CUX1-204ENST00000393824 AP5Z1O43299 807 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 RPS6KA4O75676 772 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 PLSCR1O15162 318 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 EZH2Q15910 746 aaKnown RBP13.19□□□□□ -0.3
CUX1-204ENST00000393824 RC3H1Q5TC82 1133 aaKnown RBP13.19□□□□□ -0.3
CUX1-204ENST00000393824 PPP1R42Q7Z4L9 355 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 NLRP10Q86W26 655 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 ESYT1Q9BSJ8 1104 aa13.19□□□□□ -0.3
CUX1-204ENST00000393824 SMTNL1A8MU46 457 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 BRD2P25440 801 aaKnown RBP13.18□□□□□ -0.3
CUX1-204ENST00000393824 USPL1Q5W0Q7 1092 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 KLHDC4Q8TBB5 520 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 CWC25Q9NXE8 425 aaPredicted RBP13.18□□□□□ -0.3
CUX1-204ENST00000393824 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.18□□□□□ -0.3
CUX1-204ENST00000393824 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 H7C1W4 665 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 APBB1O00213 710 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 SLC20A2Q08357 652 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 ZNF34Q8IZ26 560 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 RTCBQ9Y3I0 505 aaKnown RBP13.18□□□□□ -0.3
CUX1-204ENST00000393824 SALL3Q9BXA9 1300 aa13.18□□□□□ -0.3
CUX1-204ENST00000393824 AFDNP55196 1824 aaKnown RBP13.18□□□□□ -0.3
CUX1-204ENST00000393824 ERVV-1B6SEH8 477 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 FAM193AP78312 1265 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 TERF2Q15554 542 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 SLC27A3Q5K4L6 730 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 CCDC191Q8NCU4 936 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 AK7Q96M32 723 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 EXOC6BQ9Y2D4 811 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 NUP98P52948 1817 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 TCHHQ07283 1943 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 SRGAP3O43295 1099 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 ATP8B2P98198 1209 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 SUSD4Q5VX71 490 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 BICDL1Q6ZP65 573 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 STAP2Q9UGK3 403 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 PALD1Q9ULE6 856 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 PA2G4Q9UQ80 394 aaKnown RBP13.17□□□□□ -0.3
CUX1-204ENST00000393824 PAXBP1Q9Y5B6 917 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms