RNA–Protein interactions for RNA: ENST00000370966.9

DEPDC1-201, Transcript of DEP domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DEPDC1, Length 4,586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-201ENST00000370966 CALML4Q96GE6 196 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 CGNQ9P2M7 1197 aaKnown RBP13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 ZKSCAN5Q9Y2L8 839 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 PAXBP1Q9Y5B6 917 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 DYNC1I1O14576 645 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 PRC1O43663 620 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 CYP7A1P22680 504 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 GNAQP50148 359 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 MAP9Q49MG5 647 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 PANK2Q9BZ23 570 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 ATL3Q6DD88 541 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 NUP88Q99567 741 aaPredicted RBP13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 CRACR2AQ9BSW2 395 aa13.64□□□□□ -0.23
DEPDC1-201ENST00000370966 PATL2C9JE40 543 aaKnown RBP13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 C6orf229H3BNL8 230 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 GNAT2P19087 354 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 ANO6Q4KMQ2 910 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 RAB11FIP4Q86YS3 637 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 TSPYL1Q9H0U9 437 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 BICC1Q9H694 974 aaKnown RBP13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 GSTO1P78417 241 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 ZNF790Q6PG37 636 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 CCDC102AQ96A19 550 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 SYT1P21579 422 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 NEO1Q92859 1461 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 PPFIA3O75145 1194 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 TFCP2Q12800 502 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 SNW1Q13573 536 aaKnown RBP13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 SLC4A4Q9Y6R1 1079 aa13.63□□□□□ -0.23
DEPDC1-201ENST00000370966 NBPF6Q5VWK0 638 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 NBPF5PQ86XG9 351 aaPredicted RBP13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 FAM114A1Q8IWE2 563 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 NBPF4Q96M43 638 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 NLRP3Q96P20 1036 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 SPTLC2O15270 562 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 SPAG1Q07617 926 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 OTUD7AQ8TE49 926 aaPredicted RBP13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 LRRC27Q9C0I9 530 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 RMND1Q9NWS8 449 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 JAKMIP3Q5VZ66 844 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 CPLX3Q8WVH0 158 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 CUL5Q93034 780 aa13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 SEPT11Q9NVA2 429 aaKnown RBP13.62□□□□□ -0.23
DEPDC1-201ENST00000370966 PAFAH1B1P43034 410 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 MTIF2P46199 727 aaKnown RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 METTL22Q9BUU2 404 aaPredicted RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 HELLSQ9NRZ9 838 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 SGSM2O43147 1006 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 NOLC1Q14978 699 aaKnown RBP eCLIP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 IFIT1BQ5T764 474 aaKnown RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 BRAPQ7Z569 592 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 PCDH11XQ9BZA7 1347 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 PCDH11YQ9BZA8 1340 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 UBASH3AP57075 661 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 TYRO3Q06418 890 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 SKIDA1Q1XH10 827 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 NAA16Q6N069 864 aaPredicted RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 CCDC186Q7Z3E2 898 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 CCDC191Q8NCU4 936 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 PLBD2Q8NHP8 589 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 KIAA0754O94854 1291 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 TRMT2AQ8IZ69 625 aaKnown RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 UTP14AQ9BVJ6 771 aaKnown RBP13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 STX8Q9UNK0 236 aa13.61□□□□□ -0.23
DEPDC1-201ENST00000370966 POTEB2H3BUK9 544 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 TUBB4AP04350 444 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 CABLES1Q8TDN4 633 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 ABCC4O15439 1325 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 ARHGEF10O15013 1369 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 EYA2O00167 538 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 CALM1P0DP23 149 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 CALM2P0DP24 149 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 CALM3P0DP25 149 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 IDEP14735 1019 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 DZIP3Q86Y13 1208 aaKnown RBP13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 CTAGE1Q96RT6 745 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 PTPDC1A2A3K4 754 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 IRS4O14654 1257 aaPredicted RBP13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 RFC4P35249 363 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 ATP6V1AP38606 617 aa13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 NIP7Q9Y221 180 aaKnown RBP eCLIP13.6□□□□□ -0.23
DEPDC1-201ENST00000370966 N4BP3O15049 544 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 HLA-DOAP06340 250 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 SKILP12757 684 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 DDB1Q16531 1140 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 CEP135Q66GS9 1140 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 SETDB2Q96T68 719 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 DNAJC25Q9H1X3 360 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 PPP1R1BQ9UD71 204 aaPredicted RBP13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 MAGI2Q86UL8 1455 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 USP19O94966 1318 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 TRIM75PA6NK02 468 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 PPP4R3BQ5MIZ7 849 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 EHMT1Q9H9B1 1298 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 CETN2P41208 172 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 ISM2Q6H9L7 571 aa13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.59□□□□□ -0.23
DEPDC1-201ENST00000370966 KDM5AP29375 1690 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms