RNA–Protein interactions for RNA: ENST00000358544.6

VPS13B-203, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13B, Length 14,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-203ENST00000358544 CNGA4Q8IV77 575 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 NACAP1Q9BZK3 213 aa6.9□□□□□ -1.3
VPS13B-203ENST00000358544 LUC7L2Q9Y383 392 aaKnown RBP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 AKR1B15C9JRZ8 316 aaPredicted RBP6.9□□□□□ -1.3
VPS13B-203ENST00000358544 MYO1BO43795 1136 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 BRD1O95696 1058 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 SLFNL1Q499Z3 407 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 PLEKHM2Q8IWE5 1019 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 CTNNBL1Q8WYA6 563 aaPredicted RBP6.9□□□□□ -1.31
VPS13B-203ENST00000358544 UTP14AQ9BVJ6 771 aaKnown RBP6.9□□□□□ -1.31
VPS13B-203ENST00000358544 TDRD12Q587J7 1177 aaKnown RBP6.9□□□□□ -1.31
VPS13B-203ENST00000358544 ZNF365Q70YC5 407 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 SPTLC3Q9NUV7 552 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 EFCAB8A8MWE9 144 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 TNNC1P63316 161 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 DBN1Q16643 649 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.9□□□□□ -1.31
VPS13B-203ENST00000358544 INSRP06213 1382 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 SMARCA4P51532 1647 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 MAGEA9P43362 315 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 HNRNPH2P55795 449 aaKnown RBP6.9□□□□□ -1.31
VPS13B-203ENST00000358544 CAPS2Q9BXY5 557 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 FGD5Q6ZNL6 1462 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC141Q6ZP82 1450 aa6.9□□□□□ -1.31
VPS13B-203ENST00000358544 DAPK1P53355 1430 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 FANCCQ00597 558 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 AIMP1Q12904 312 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 GIGYF1O75420 1035 aaPredicted RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 LRMPQ12912 555 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 ERCC3P19447 782 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 RABGGTAQ92696 567 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC43Q96MW1 224 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 TSGA10Q9BZW7 698 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 PDE1AP54750 535 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 HOMEZQ8IX15 550 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 IGSF22Q8N9C0 903 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 ZBTB40Q9NUA8 1239 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 SPTBP11277 2137 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CCT5P48643 541 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 KANK3Q6NY19 840 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 EFCAB13Q8IY85 973 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 GUCY1B3Q02153 619 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC158Q5M9N0 1113 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CACNA2D4Q7Z3S7 1137 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 HOOK3Q86VS8 718 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 SECISBP2LQ93073 1101 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 DDX27Q96GQ7 796 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 JPH2Q9BR39 696 aaPredicted RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 BMP2KQ9NSY1 1161 aaPredicted RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 PEX19P40855 299 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 KRT83P78385 493 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 MAP3K9P80192 1104 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CAMSAP2Q08AD1 1489 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 NCBP1Q09161 790 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC77Q9BR77 488 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 FYB1O15117 783 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 ARHGAP6O43182 974 aa6.89□□□□□ -1.31
VPS13B-203ENST00000358544 TRIM21P19474 475 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 TTF2Q9UNY4 1162 aaKnown RBP6.89□□□□□ -1.31
VPS13B-203ENST00000358544 SMIM23A6NLE4 172 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 CCT2P78371 535 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 ZBTB16Q05516 673 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 MRFAP1L1Q96HT8 127 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 TPX2Q9ULW0 747 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 PTPN23Q9H3S7 1636 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 GOLGA8AA7E2F4 631 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 VPS37DQ86XT2 251 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 CACNA2D3Q8IZS8 1091 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 A0A1W2PRG0 241 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 MXRA7P84157 204 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 IFT81Q8WYA0 676 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 IMPACTQ9P2X3 320 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 SPTAN1Q13813 2472 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 NEDD9Q14511 834 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 MBIPQ9NS73 344 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 ALDH3A1P30838 453 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC40Q4G0X9 1142 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 RPUSD2Q8IZ73 545 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 KIAA1524Q8TCG1 905 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 PPFIA3O75145 1194 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 STAMBPO95630 424 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 HSP90AA4PQ58FG1 418 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 CCDC122Q5T0U0 273 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 EFCAB5A4FU69 1503 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 ASCC3Q8N3C0 2202 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 SPTLC2O15270 562 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 CREB3O43889 395 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 IFI16Q16666 785 aaKnown RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 KLHL34Q8N239 644 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 TRIM7Q9C029 511 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 KIF3CO14782 793 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 STMN2Q93045 179 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 EVI5LQ96CN4 794 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 LRRC45Q96CN5 670 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 MARCKSP29966 332 aaPredicted RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 NUTM2AQ8IVF1 878 aaPredicted RBP6.88□□□□□ -1.31
VPS13B-203ENST00000358544 TRIM47Q96LD4 638 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 RMND1Q9NWS8 449 aa6.88□□□□□ -1.31
VPS13B-203ENST00000358544 BAIAP2L1Q9UHR4 511 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms