RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 BICD2Q8TD16 824 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 GDAP1L1Q96MZ0 367 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 NBPF3Q9H094 633 aa11.16□□□□□ -0.62
PTCHD4-201ENST00000339488 CTAGE5O15320 804 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 MYBL1P10243 752 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 ANAPC15P60006 121 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 AOPEPQ8N6M6 819 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 MRFAP1L1Q96HT8 127 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 FBXO3Q9UK99 471 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 ABCC1P33527 1531 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 RTL1A6NKG5 1358 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 RTN2O75298 545 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 FAM163BP0C2L3 166 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 RHOXF2BP0C7M4 288 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 USP4Q13107 963 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 KRT24Q2M2I5 525 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 ANKRD18AQ8IVF6 992 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 RHOXF2Q9BQY4 288 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 POLD4Q9HCU8 107 aa11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 SPATS2LQ9NUQ6 558 aaKnown RBP11.15□□□□□ -0.62
PTCHD4-201ENST00000339488 TRAPPC8Q9Y2L5 1435 aa11.15□□□□□ -0.63
PTCHD4-201ENST00000339488 RNF40O75150 1001 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 PDHBP11177 359 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 HSP90B2PQ58FF3 399 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 BEND6Q5SZJ8 279 aaPredicted RBP11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 MYSM1Q5VVJ2 828 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 RILPL2Q969X0 211 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 DHX58Q96C10 678 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 FMNL2Q96PY5 1086 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 SFPQP23246 707 aaKnown RBP eCLIP11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 MTHFSP49914 203 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 TBC1D25Q3MII6 688 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 EFCAB2Q5VUJ9 269 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 A2MP01023 1474 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 MSH6P52701 1360 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 SGSM2O43147 1006 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 RPS6KA3P51812 740 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 AK2P54819 239 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 PREPLQ4J6C6 727 aaPredicted RBP11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 CDC37L1Q7L3B6 337 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 C3orf20Q8ND61 904 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 STAG1Q8WVM7 1258 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 SH3GL3Q99963 347 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 ZCWPW1Q9H0M4 648 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 TMEM165Q9HC07 324 aa11.14□□□□□ -0.63
PTCHD4-201ENST00000339488 ADGRL1O94910 1474 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 LRRIQ3A6PVS8 624 aaPredicted RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 GNG11P61952 73 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 CEBPZQ03701 1054 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 RSRC2Q7L4I2 434 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 NECAB1Q8N987 351 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 ARMC2Q8NEN0 867 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 SPDYE1Q8NFV5 336 aaPredicted RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 CLSTN2Q9H4D0 955 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 ARAP3Q8WWN8 1544 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 PHLPP2Q6ZVD8 1323 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 ARHGEF5Q12774 1597 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 SF3A1Q15459 793 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 RUFY3Q7L099 469 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 HDXQ7Z353 690 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 AFAP1Q8N556 730 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 AFAP1L1Q8TED9 768 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 SPDL1Q96EA4 605 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 ESYT1Q9BSJ8 1104 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 UTP14AQ9BVJ6 771 aaKnown RBP11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 TTC41PQ6P2S7 1318 aa11.13□□□□□ -0.63
PTCHD4-201ENST00000339488 EBAG9O00559 213 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 CASP8Q14790 479 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 THEMIS2Q5TEJ8 643 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 ARMCX6Q7L4S7 300 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 IRX2Q9BZI1 471 aaPredicted RBP11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 XPO4Q9C0E2 1151 aaKnown RBP11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 KAT14Q9H8E8 782 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 ANKZF1Q9H8Y5 726 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 RTEL1Q9NZ71 1219 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 IFNKQ9P0W0 207 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 DDX20Q9UHI6 824 aaKnown RBP11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 CCDC151A5D8V7 595 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 ERCC3P19447 782 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 TXLNAP40222 546 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 KCNB1Q14721 858 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 CRYMQ14894 314 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 DHX40Q8IX18 779 aaKnown RBP11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 GOLGA1Q92805 767 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 PSMD1Q99460 953 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 ATP6V1DQ9Y5K8 247 aa11.12□□□□□ -0.63
PTCHD4-201ENST00000339488 RNF17Q9BXT8 1623 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 EIF4E1BA6NMX2 242 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 CHUKO15111 745 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 EIF3JO75822 258 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 SNUPNO95149 360 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 PPARDQ03181 441 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 KARSQ15046 597 aaKnown RBP11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 DDX11Q96FC9 970 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 SCLT1Q96NL6 688 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.11□□□□□ -0.634e-7■■□□□ 12.8
PTCHD4-201ENST00000339488 TRIM35Q9UPQ4 493 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 ADGBQ8N7X0 1667 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 TTC21BQ7Z4L5 1316 aa11.11□□□□□ -0.63
PTCHD4-201ENST00000339488 UPP2O95045 317 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms