RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 TUBB4BP68371 445 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 ZNF444Q8N0Y2 327 aaPredicted RBP16.87■□□□□ 0.29
SCN3B-201ENST00000299333 RNF41Q9H4P4 317 aaPredicted RBP16.87■□□□□ 0.29
SCN3B-201ENST00000299333 TOP2BQ02880 1626 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 LMNTD2Q8IXW0 634 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 RABEP2Q9H5N1 569 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 PLEKHH2Q8IVE3 1493 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 GCKP35557 465 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 ARID5AQ03989 594 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 B4GALNT4Q76KP1 1039 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 GSTA5Q7RTV2 222 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 SUPT6HQ7KZ85 1726 aaKnown RBP16.87■□□□□ 0.29
SCN3B-201ENST00000299333 F13A1P00488 732 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 CCDC172P0C7W6 258 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 ARL1P40616 181 aaPredicted RBP16.87■□□□□ 0.29
SCN3B-201ENST00000299333 CHMP4BP1P59074 171 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 MAP7D1Q3KQU3 841 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 ZWINTO95229 277 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 FMNL3Q8IVF7 1028 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 KCNG4Q8TDN1 519 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 ERO1AQ96HE7 468 aa16.87■□□□□ 0.29
SCN3B-201ENST00000299333 DHX29Q7Z478 1369 aaKnown RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 MARCKSP29966 332 aaPredicted RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 HPDP32754 393 aaPredicted RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 SPAG1Q07617 926 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 IFNKQ9P0W0 207 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 NDUFAB1O14561 156 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 BRF1Q92994 677 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 CUL5Q93034 780 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 FERMT1Q9BQL6 677 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 UTP14AQ9BVJ6 771 aaKnown RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 ECHDC1Q9NTX5 307 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 INTS8Q75QN2 995 aaKnown RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 CCDC25Q86WR0 208 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 UBLCP1Q8WVY7 318 aaPredicted RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 PPP1R9BQ96SB3 815 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 ZNF692Q9BU19 519 aaPredicted RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 LUC7L2Q9Y383 392 aaKnown RBP16.86■□□□□ 0.29
SCN3B-201ENST00000299333 TMEM110-MUSTN1A8MSY1 372 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 MAP3K9P80192 1104 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 BICDL1Q6ZP65 573 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 C9orf84Q5VXU9 1444 aa16.86■□□□□ 0.29
SCN3B-201ENST00000299333 VIMP08670 466 aaKnown RBP16.85■□□□□ 0.29
SCN3B-201ENST00000299333 GJC1P36383 396 aa16.85■□□□□ 0.29
SCN3B-201ENST00000299333 CRACR2BQ8N4Y2 399 aaPredicted RBP16.85■□□□□ 0.29
SCN3B-201ENST00000299333 ZNF622Q969S3 477 aaKnown RBP eCLIP16.85■□□□□ 0.29
SCN3B-201ENST00000299333 RIOK3O14730 519 aaKnown RBP16.85■□□□□ 0.29
SCN3B-201ENST00000299333 TCEANC2Q96MN5 208 aa16.85■□□□□ 0.29
SCN3B-201ENST00000299333 CCDC42Q96M95 316 aa16.85■□□□□ 0.29
SCN3B-201ENST00000299333 NSD3Q9BZ95 1437 aa16.85■□□□□ 0.29
SCN3B-201ENST00000299333 GBP7Q8N8V2 638 aaPredicted RBP16.85■□□□□ 0.29
SCN3B-201ENST00000299333 LRRC2Q9BYS8 371 aa16.85■□□□□ 0.29
SCN3B-201ENST00000299333 RTL1A6NKG5 1358 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 ATP2A1O14983 1001 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 STXBP4Q6ZWJ1 553 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 POTEDQ86YR6 584 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 VAT1LQ9HCJ6 419 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 STAT6P42226 847 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 TOM1L2Q6ZVM7 507 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 SYNJ2O15056 1496 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 PRPHP41219 470 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 CAVIN4Q5BKX8 364 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 CACNA2D3Q8IZS8 1091 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 HMG20BQ9P0W2 317 aa16.84■□□□□ 0.29
SCN3B-201ENST00000299333 RAB3GAP1Q15042 981 aa16.83■□□□□ 0.29
SCN3B-201ENST00000299333 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.83■□□□□ 0.29
SCN3B-201ENST00000299333 GABPB1Q06547 395 aaPredicted RBP16.83■□□□□ 0.29
SCN3B-201ENST00000299333 IFT74Q96LB3 600 aa16.83■□□□□ 0.29
SCN3B-201ENST00000299333 TRIM7Q9C029 511 aa16.83■□□□□ 0.29
SCN3B-201ENST00000299333 GRIN2BQ13224 1484 aa16.83■□□□□ 0.29
SCN3B-201ENST00000299333 CIB2O75838 187 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 PPM1FP49593 454 aaPredicted RBP16.83■□□□□ 0.28
SCN3B-201ENST00000299333 CEP85LQ5SZL2 805 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 NCOA7Q8NI08 942 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 SDSP20132 328 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 SF3B2Q13435 895 aaKnown RBP16.83■□□□□ 0.28
SCN3B-201ENST00000299333 LMBR1Q8WVP7 490 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 DAPK1P53355 1430 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 PABPN1LA6NDY0 278 aaKnown RBP16.83■□□□□ 0.28
SCN3B-201ENST00000299333 TUBBP07437 444 aa16.83■□□□□ 0.28
SCN3B-201ENST00000299333 TTF1Q15361 905 aaPredicted RBP16.83■□□□□ 0.28
SCN3B-201ENST00000299333 KLF18A0A0U1RQI7 1052 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 FLIIQ13045 1269 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 LRRC27Q9C0I9 530 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 RPGRIP1LQ68CZ1 1315 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 UBXN1Q04323 297 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 WHAMMQ8TF30 809 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 ZNF853P0CG23 659 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 NEDD9Q14511 834 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 CCDC174Q6PII3 467 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 STX17P56962 302 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 ELF2Q15723 593 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 SNX21Q969T3 373 aa16.82■□□□□ 0.28
SCN3B-201ENST00000299333 PSMA7O14818 248 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 TBCAO75347 108 aaKnown RBP16.81■□□□□ 0.28
SCN3B-201ENST00000299333 MORC4Q8TE76 937 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 ALG1Q9BT22 464 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 NUCB1Q02818 461 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 DBN1Q16643 649 aa16.81■□□□□ 0.28
SCN3B-201ENST00000299333 TMCO4Q5TGY1 634 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms