RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 NAPAP54920 295 aa19.82■□□□□ 0.76
SHANK1-201ENST00000293441 MAP2K1Q02750 393 aaPredicted RBP19.82■□□□□ 0.76
SHANK1-201ENST00000293441 TMCO3Q6UWJ1 677 aa19.82■□□□□ 0.76
SHANK1-201ENST00000293441 TMTC2Q8N394 836 aa19.82■□□□□ 0.76
SHANK1-201ENST00000293441 BIVM-ERCC5R4GMW8 1640 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 MAGEB6Q8N7X4 407 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 CALM1P0DP23 149 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 CALM2P0DP24 149 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 CALM3P0DP25 149 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 RBM25P49756 843 aaKnown RBP19.81■□□□□ 0.76
SHANK1-201ENST00000293441 MIGA1Q8NAN2 632 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 SMARCC2Q8TAQ2 1214 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 ALS2CR12Q96Q35 445 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 RBM27Q9P2N5 1060 aaKnown RBP19.81■□□□□ 0.76
SHANK1-201ENST00000293441 SBNO2Q9Y2G9 1366 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 MAP9Q49MG5 647 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 PPP4R3BQ5MIZ7 849 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 ARHGAP45Q92619 1136 aa19.81■□□□□ 0.76
SHANK1-201ENST00000293441 SYKP43405 635 aa19.8■□□□□ 0.76
SHANK1-201ENST00000293441 C19orf44Q9H6X5 657 aa19.8■□□□□ 0.76
SHANK1-201ENST00000293441 ATP8B2P98198 1209 aa19.8■□□□□ 0.76
SHANK1-201ENST00000293441 CWF19L2Q2TBE0 894 aaKnown RBP19.8■□□□□ 0.76
SHANK1-201ENST00000293441 C16orf71Q8IYS4 520 aaPredicted RBP19.8■□□□□ 0.76
SHANK1-201ENST00000293441 ZSCAN16Q9H4T2 348 aaPredicted RBP19.8■□□□□ 0.76
SHANK1-201ENST00000293441 LMTK3Q96Q04 1460 aa19.8■□□□□ 0.76
SHANK1-201ENST00000293441 PDE1AP54750 535 aa19.8■□□□□ 0.76
SHANK1-201ENST00000293441 ZSCAN30Q86W11 494 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 FLT4P35916 1363 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 NF2P35240 595 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 RRAGBQ5VZM2 374 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 COMMD10Q9Y6G5 202 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 BTG4Q9NY30 223 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 NMIQ13287 307 aaPredicted RBP19.79■□□□□ 0.76
SHANK1-201ENST00000293441 NBPF14Q5TI25 921 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 JDP2Q8WYK2 163 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 PSMD1Q99460 953 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 POLKQ9UBT6 870 aa19.79■□□□□ 0.76
SHANK1-201ENST00000293441 MAP3K5Q99683 1374 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 CALRP27797 417 aaKnown RBP19.78■□□□□ 0.76
SHANK1-201ENST00000293441 TMX3Q96JJ7 454 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 RMND1Q9NWS8 449 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 MCM9Q9NXL9 1143 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 GNAQP50148 359 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 UBE2HP62256 183 aa19.78■□□□□ 0.76
SHANK1-201ENST00000293441 TRAF1Q13077 416 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 GNPATO15228 680 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 GCP02774 474 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 ESYT1Q9BSJ8 1104 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 CHST3Q7LGC8 479 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 ANKRD44Q8N8A2 993 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 ERICH4A6NGS2 130 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 HLTFQ14527 1009 aaKnown RBP eCLIP19.77■□□□□ 0.76
SHANK1-201ENST00000293441 SYNCQ9H7C4 482 aa19.77■□□□□ 0.76
SHANK1-201ENST00000293441 PHACTR2O75167 634 aa19.77■□□□□ 0.75
SHANK1-201ENST00000293441 HDAC1Q13547 482 aaPredicted RBP19.77■□□□□ 0.75
SHANK1-201ENST00000293441 PDCL2Q8N4E4 241 aa19.77■□□□□ 0.75
SHANK1-201ENST00000293441 PCDH11XQ9BZA7 1347 aa19.77■□□□□ 0.75
SHANK1-201ENST00000293441 PCDH11YQ9BZA8 1340 aa19.77■□□□□ 0.75
SHANK1-201ENST00000293441 MCM3P25205 808 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 ZSCAN22P10073 491 aaPredicted RBP19.76■□□□□ 0.75
SHANK1-201ENST00000293441 TFCP2Q12800 502 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 TTC16Q8NEE8 873 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 TBC1D5Q92609 795 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 GSDMDP57764 484 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 N4BP3O15049 544 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 ZNF165P49910 485 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 GCOM1H8Y6P7 765 aaPredicted RBP19.76■□□□□ 0.75
SHANK1-201ENST00000293441 MYZAPP0CAP1 466 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 C16orf45Q96MC5 204 aaPredicted RBP19.76■□□□□ 0.75
SHANK1-201ENST00000293441 TAOK3Q9H2K8 898 aa19.76■□□□□ 0.75
SHANK1-201ENST00000293441 ADCY5O95622 1261 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 LDHBP07195 334 aaKnown RBP19.75■□□□□ 0.75
SHANK1-201ENST00000293441 UBE4AQ14139 1066 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 RRP36Q96EU6 259 aaKnown RBP19.75■□□□□ 0.75
SHANK1-201ENST00000293441 DCAF5Q96JK2 942 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 MARCKSP29966 332 aaPredicted RBP19.75■□□□□ 0.75
SHANK1-201ENST00000293441 HSP90AA4PQ58FG1 418 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 TRAPPC3LQ5T215 181 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 RBM17Q96I25 401 aaKnown RBP19.75■□□□□ 0.75
SHANK1-201ENST00000293441 NPATQ14207 1427 aa19.75■□□□□ 0.75
SHANK1-201ENST00000293441 GIMAP6Q6P9H5 292 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 SPDYE3A6NKU9 549 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 KRT24Q2M2I5 525 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 RNMTO43148 476 aaKnown RBP19.74■□□□□ 0.75
SHANK1-201ENST00000293441 LMAN1P49257 510 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 GNAT2P19087 354 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 HOXC9P31274 260 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 ANKRD2Q9GZV1 360 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 LINS1Q8NG48 757 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 EYA1Q99502 592 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 CNPY2Q9Y2B0 182 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 CTTNBP2Q8WZ74 1663 aa19.74■□□□□ 0.75
SHANK1-201ENST00000293441 RNF113AO15541 343 aaKnown RBP19.73■□□□□ 0.75
SHANK1-201ENST00000293441 KRT13P13646 458 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 BICC1Q9H694 974 aaKnown RBP19.73■□□□□ 0.75
SHANK1-201ENST00000293441 C6orf50Q9HD87 102 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 PLCG2P16885 1265 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 ZNF354CQ86Y25 554 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 EYA3Q99504 573 aa19.73■□□□□ 0.75
SHANK1-201ENST00000293441 NAA15Q9BXJ9 866 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms