RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 HDAC5Q9UQL6 1122 aa12.02□□□□□ -0.49
COPB1-201ENST00000249923 FMNL2Q96PY5 1086 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 FOXP2O15409 715 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 CTDNEP1O95476 244 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 PSMA5P28066 241 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 SCRN1Q12765 414 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 ZNF592Q92610 1267 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 ATP6V1DQ9Y5K8 247 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 MRVI1Q9Y6F6 885 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 TOGARAM1Q9Y4F4 1720 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 ELP1O95163 1332 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 PALLDQ8WX93 1383 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 LRRC24Q50LG9 513 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 Q6ZUG5 572 aa12.01□□□□□ -0.49
COPB1-201ENST00000249923 ZNF594Q96JF6 807 aaPredicted RBP12.01□□□□□ -0.49
COPB1-201ENST00000249923 FTOQ9C0B1 505 aaKnown RBP eCLIP12.01□□□□□ -0.493e-14■□□□□ 8.6
COPB1-201ENST00000249923 H7C1W4 665 aa12□□□□□ -0.49
COPB1-201ENST00000249923 TERF1P54274 439 aa12□□□□□ -0.49
COPB1-201ENST00000249923 TIMM10P62072 90 aa12□□□□□ -0.49
COPB1-201ENST00000249923 PLBD2Q8NHP8 589 aa12□□□□□ -0.49
COPB1-201ENST00000249923 FBXW7Q969H0 707 aa12□□□□□ -0.49
COPB1-201ENST00000249923 NPHP1O15259 732 aa12□□□□□ -0.49
COPB1-201ENST00000249923 PPFIA3O75145 1194 aa12□□□□□ -0.49
COPB1-201ENST00000249923 ADD1P35611 737 aaKnown RBP12□□□□□ -0.49
COPB1-201ENST00000249923 RESTQ13127 1097 aa12□□□□□ -0.49
COPB1-201ENST00000249923 TTC5Q8N0Z6 440 aa12□□□□□ -0.49
COPB1-201ENST00000249923 LEO1Q8WVC0 666 aaPredicted RBP12□□□□□ -0.49
COPB1-201ENST00000249923 HMG20BQ9P0W2 317 aa12□□□□□ -0.49
COPB1-201ENST00000249923 NEK1Q96PY6 1258 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 RFX7Q2KHR2 1363 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 NR1I2O75469 434 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 A1BGP04217 495 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 CSB-PGBD3P0DP91 1061 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 CKAP2LQ8IYA6 745 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 PUS3Q9BZE2 481 aaKnown RBP11.99□□□□□ -0.49
COPB1-201ENST00000249923 DACT1Q9NYF0 836 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 RNF20Q5VTR2 975 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 RBM43Q6ZSC3 357 aaKnown RBP11.99□□□□□ -0.49
COPB1-201ENST00000249923 PIBF1Q8WXW3 757 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 BRF1Q92994 677 aa11.99□□□□□ -0.49
COPB1-201ENST00000249923 DDX60Q8IY21 1712 aaKnown RBP11.99□□□□□ -0.49
COPB1-201ENST00000249923 LETM1O95202 739 aaPredicted RBP11.98□□□□□ -0.49
COPB1-201ENST00000249923 KRT85P78386 507 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 MCMDC2Q4G0Z9 681 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 LUZP1Q86V48 1076 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 KBTBD3Q8NAB2 608 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 PYCARDQ9ULZ3 195 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 SPATA31A3Q5VYP0 1347 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 SH3TC1Q8TE82 1336 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 CPDO75976 1380 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 GOLIM4O00461 696 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 CABP4P57796 275 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.98□□□□□ -0.49
COPB1-201ENST00000249923 ILDR1Q86SU0 546 aaPredicted RBP11.98□□□□□ -0.49
COPB1-201ENST00000249923 SMARCC2Q8TAQ2 1214 aa11.98□□□□□ -0.49
COPB1-201ENST00000249923 TYRO3Q06418 890 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 ANKRD1Q15327 319 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 DCCP43146 1447 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 SALL1Q9NSC2 1324 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 NSUN7Q8NE18 718 aaKnown RBP11.97□□□□□ -0.49
COPB1-201ENST00000249923 NKX2-3Q8TAU0 364 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 MAST3O60307 1309 aa11.97□□□□□ -0.49
COPB1-201ENST00000249923 EXOSC10Q01780 885 aaKnown RBP11.96□□□□□ -0.49
COPB1-201ENST00000249923 CHAF1AQ13111 956 aaPredicted RBP11.96□□□□□ -0.49
COPB1-201ENST00000249923 TTLL5Q6EMB2 1281 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 CHST3Q7LGC8 479 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 ZBTB3Q9H5J0 574 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 NCOA5Q9HCD5 579 aaKnown RBP11.96□□□□□ -0.49
COPB1-201ENST00000249923 GPHNQ9NQX3 736 aaPredicted RBP11.96□□□□□ -0.49
COPB1-201ENST00000249923 SPTLC3Q9NUV7 552 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 NAP1L2Q9ULW6 460 aaPredicted RBP11.96□□□□□ -0.49
COPB1-201ENST00000249923 M0R2C6 588 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 NOLC1Q14978 699 aaKnown RBP eCLIP11.96□□□□□ -0.496e-13■■■■□ 25.3
COPB1-201ENST00000249923 SPATA32Q96LK8 384 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 AGXT2Q9BYV1 514 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 PAG1Q9NWQ8 432 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 TNS2Q63HR2 1409 aa11.96□□□□□ -0.49
COPB1-201ENST00000249923 PLEKHG2Q9H7P9 1386 aa11.96□□□□□ -0.5
COPB1-201ENST00000249923 A0A087WWV3 80 aa11.96□□□□□ -0.5
COPB1-201ENST00000249923 ATF3P18847 181 aa11.96□□□□□ -0.5
COPB1-201ENST00000249923 FOSBP53539 338 aa11.96□□□□□ -0.5
COPB1-201ENST00000249923 APOBRQ0VD83 1088 aa11.96□□□□□ -0.5
COPB1-201ENST00000249923 ABCA3Q99758 1704 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 HSPD1P10809 573 aaKnown RBP11.95□□□□□ -0.5
COPB1-201ENST00000249923 ZMYM1Q5SVZ6 1142 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 NUP62CLQ9H1M0 184 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 COL5A2P05997 1499 aaPredicted RBP11.95□□□□□ -0.5
COPB1-201ENST00000249923 PDCP20941 246 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 SCARF1Q14162 830 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 ZBTB9Q96C00 473 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 GOLPH3LQ9H4A5 285 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 CBX8Q9HC52 389 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 U3KPZ7 1027 aaPredicted RBP11.95□□□□□ -0.5
COPB1-201ENST00000249923 PFKFB2O60825 505 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 ADORA1P30542 326 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 MAP3K11Q16584 847 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 ANO6Q4KMQ2 910 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 OSBP2Q969R2 916 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 NEUROD6Q96NK8 337 aa11.95□□□□□ -0.5
COPB1-201ENST00000249923 MYO5AQ9Y4I1 1855 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms