RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 HS3ST1O14792 307 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 DIRAS1O95057 198 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 ATE1O95260 518 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 IGKV3-15P01624 115 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 CD14P08571 375 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 ACADSP16219 412 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 CD40P25942 277 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 ZNF84P51523 738 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 LSM11P83369 360 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS52-213ENST00000461743 ARF1P84077 181 aaKnown RBP10.37□□□□□ -0.75
VPS52-213ENST00000461743 FHL1Q13642 323 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 SEC23BQ15437 767 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 HIKESHIQ53FT3 197 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 PHYHD1Q5SRE7 291 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 RPL13AP3Q6NVV1 102 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 TBPL2Q6SJ96 375 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 ZNF611Q8N823 705 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 OR52J3Q8NH60 311 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 FAM210AQ96ND0 272 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 KCNK17Q96T54 332 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 FOXB1Q99853 325 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 BEX4Q9NWD9 120 aaPredicted RBP10.37□□□□□ -0.75
VPS52-213ENST00000461743 SIGLEC7Q9Y286 467 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 LYVE1Q9Y5Y7 322 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 ARFGEF3Q5TH69 2177 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 CHD3Q12873 2000 aaKnown RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 ARRDC5A6NEK1 342 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 DPRXA6NFQ7 191 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 UNC119BA6NIH7 251 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 TNFRSF11BO00300 401 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ABCD4O14678 606 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 GSC2O15499 205 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 DHHO43323 396 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 OR10H3O60404 316 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 TRMUO75648 421 aaKnown RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 UBL3O95164 117 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FARS2O95363 451 aaKnown RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 IGLV1-44P01699 117 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 APEHP13798 732 aaKnown RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 CDH2P19022 906 aaPredicted RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 ARR3P36575 388 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 CTXN1P60606 82 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FOXD4Q12950 439 aaPredicted RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 KEAP1Q14145 624 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ZNF672Q499Z4 452 aaPredicted RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 GPR139Q6DWJ6 353 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 OR2T5Q6IEZ7 315 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 C1orf94Q6P1W5 598 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ZNF813Q6ZN06 617 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ADCK1Q86TW2 530 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 WDFY1Q8IWB7 410 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ADGRG5Q8IZF4 528 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 DEPDC4Q8N2C3 294 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 OR2T29Q8NH02 315 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 OR51A7Q8NH64 312 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 ZNF519Q8TB69 540 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FANK1Q8TC84 345 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 PIGTQ969N2 578 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FBXW5Q969U6 566 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 SLC38A2Q96QD8 506 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 TSPAN32Q96QS1 320 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FOXC2Q99958 501 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 KATNB1Q9BVA0 655 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 CADM1Q9BY67 442 aaKnown RBP10.36□□□□□ -0.75
VPS52-213ENST00000461743 REEP1Q9H902 201 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 UBTD1Q9HAC8 227 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 FAIMQ9NVQ4 179 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 TMEM38BQ9NVV0 291 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 POMPQ9Y244 141 aa10.36□□□□□ -0.75
VPS52-213ENST00000461743 TCRBV3S1A0A5B6 114 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 SHISA9B4DS77 424 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 M0R1B8 84 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 XKRYO14609 159 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 PTP4A3O75365 173 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 QDPRP09417 244 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 B4GALT1P15291 398 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 NPR2P20594 1047 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 SDHAP31040 664 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 RPL4P36578 427 aaKnown RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 ACVR1BP36896 505 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 GSSP48637 474 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 ZNF83P51522 516 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 RPS6KA3P51812 740 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 CDH11P55287 796 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 CD47Q08722 323 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 TSPAN31Q12999 210 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 TOP3AQ13472 1001 aaPredicted RBP10.35□□□□□ -0.75
VPS52-213ENST00000461743 LAPTM4AQ15012 233 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 THEM4Q5T1C6 240 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 ALKBH2Q6NS38 261 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 PGBD2Q6P3X8 592 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 SMARCD3Q6STE5 483 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 DPY19L2P2Q6ZN68 376 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 FAM122BQ7Z309 247 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 ZER1Q7Z7L7 766 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 ARIH2OSQ8N7S6 290 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 KBTBD8Q8NFY9 601 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 OR4C15Q8NGM1 316 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 GNPDA2Q8TDQ7 276 aa10.35□□□□□ -0.75
VPS52-213ENST00000461743 HDAC2Q92769 488 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms