RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 SLC25A37Q9NYZ2 338 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 CALML5Q9NZT1 146 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 DNAJB9Q9UBS3 223 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 RIMS3Q9UJD0 308 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 FBXW2Q9UKT8 454 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 POMT2Q9UKY4 750 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 LRRC42Q9Y546 428 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 KLK4Q9Y5K2 254 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 GMEB1Q9Y692 573 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 ASXL3Q9C0F0 2248 aa4.21□□□□□ -1.74
VPS29-212ENST00000621131 ACACAQ13085 2346 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 IGKV1-8A0A0C4DH67 115 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 A0A0G2JN53 185 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 SYNDIG1LA6NDD5 238 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 TLCD2A6NGC4 264 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 RTCAO00442 366 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 CLOCKO15516 846 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 EMC8O43402 210 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 LCMT2O60294 686 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 SRPX2O60687 465 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 SCN2BO60939 215 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PRKRAO75569 313 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 SERPINB7O75635 380 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 HPRP00739 348 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 FABP3P05413 133 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 FHP07954 510 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 RPSAP08865 295 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 ALOX12P18054 663 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 GATA2P23769 480 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 CHMP24386 653 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 SHC1P29353 583 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 IFNA8P32881 189 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 KDELR2P33947 212 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CDKN2CP42773 168 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CSNK1EP49674 416 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 RAD23AP54725 363 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 AQP4P55087 323 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 MAZP56270 477 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 VSX2P58304 361 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 RAB8AP61006 207 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 HBA1P69905 142 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 MC1RQ01726 317 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CSTF1Q05048 431 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 PLA2G7Q13093 441 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 GK3PQ14409 553 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 MELKQ14680 651 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 DEFB133Q30KQ1 61 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 RFX4Q33E94 735 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 IFI44LQ53G44 452 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.2□□□□□ -1.74
VPS29-212ENST00000621131 ATAD3BQ5T9A4 648 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 TMEM64Q6YI46 380 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 EIF3MQ7L2H7 374 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 SH2D6Q7Z4S9 175 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CALHM3Q86XJ0 350 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 HIPK1Q86Z02 1210 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 ZDHHC21Q8IVQ6 265 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 MSRB3Q8IXL7 192 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 ST13P4Q8IZP2 240 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 CLEC4FQ8N1N0 589 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 LRRC25Q8N386 305 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 ARL14Q8N4G2 192 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CSNK1A1LQ8N752 337 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 ARL10Q8N8L6 244 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PAPD5Q8NDF8 572 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 OR4K14Q8NGD5 310 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 OR4C3Q8NH37 302 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PNPT1Q8TCS8 783 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 PROX1Q92786 737 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CIDECQ96AQ7 238 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 NEURL3Q96EH8 262 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 AURKBQ96GD4 344 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 PYURFQ96I23 114 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 TPD52L3Q96J77 140 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 RDH12Q96NR8 316 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 CIB1Q99828 191 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PELOQ9BRX2 385 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 CHID1Q9BWS9 393 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 VN1R1Q9GZP7 353 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PPIL3Q9H2H8 161 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 ARRDC1-AS1Q9H2J1 176 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 TCEAL2Q9H3H9 227 aaPredicted RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 TMEM38AQ9H6F2 299 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 RPF2Q9H7B2 306 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 PDE7BQ9NP56 450 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 A4GALTQ9NPC4 353 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 SLC35C2Q9NQQ7 365 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 AGPAT4Q9NRZ5 378 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 DCAF13Q9NV06 445 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 TAS2R7Q9NYW3 318 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 P2RX2Q9UBL9 471 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 TRPC4Q9UBN4 977 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 AASSQ9UDR5 926 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 ENOPH1Q9UHY7 261 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 FAM32AQ9Y421 112 aaKnown RBP4.2□□□□□ -1.74
VPS29-212ENST00000621131 V9GYQ6 96 aa4.2□□□□□ -1.74
VPS29-212ENST00000621131 PCM1Q15154 2024 aa4.19□□□□□ -1.74
VPS29-212ENST00000621131 CEP192Q8TEP8 1941 aa4.19□□□□□ -1.74
VPS29-212ENST00000621131 ADAMTS9Q9P2N4 1935 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms