RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SLC38A2Q96QD8 506 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ZNF607Q96SK3 696 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 C1QTNF6Q9BXI9 259 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 BEX2Q9BXY8 128 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 RAB1BQ9H0U4 201 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 RABEP2Q9H5N1 569 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 A4GALTQ9NPC4 353 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS41-208ENST00000448833 SLC13A4Q9UKG4 626 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 RCE1Q9Y256 329 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 SPEF1Q9Y4P9 236 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 V9GYY5 206 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 A0A1W2PR80 420 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 ZC3H12DA2A288 527 aaKnown RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 RPL36A-HNRNPH2H7BZ11 118 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 AIM2O14862 343 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 POLR3GO15318 223 aaPredicted RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 NPIPB7O75200 414 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 NDUFS7O75251 213 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 SLC43A1O75387 559 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 HNF1AP20823 631 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 PRKAR1BP31321 381 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 ARR3P36575 388 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MRPL19P49406 292 aaKnown RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 MVDP53602 400 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MAGOHP61326 146 aaKnown RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 NCALDP61601 193 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 KRTAP1-1Q07627 177 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 SWI5Q1ZZU3 235 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 TMEM249Q2WGJ8 235 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 TBRG1Q3YBR2 411 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 FAM69AQ5T7M9 428 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 C9orf135Q5VTT2 229 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 REEP3Q6NUK4 255 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 NIPAL3Q6P499 406 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 ULK3Q6PHR2 472 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 C6orf89Q6UWU4 347 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 ZNF836Q6ZNA1 936 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 GPR137CQ8N3F9 429 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MAPK1IP1LQ8NDC0 245 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 OR1K1Q8NGR3 316 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 OR6S1Q8NH40 331 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MGARPQ8TDB4 240 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 C10orf105Q8TEF2 133 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 GTF2H4Q92759 462 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 C3orf49Q96BT1 292 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 SLC25A36Q96CQ1 311 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 DNAJA3Q96EY1 480 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 SLC47A1Q96FL8 570 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 TMEM19Q96HH6 336 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 ZNF385AQ96PM9 386 aaKnown RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 EPYCQ99645 322 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MDFIQ99750 246 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 PIMREGQ9BSJ6 248 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 DENND2DQ9H6A0 471 aaPredicted RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 B3GAT2Q9NPZ5 323 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 CRNNQ9UBG3 495 aaPredicted RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 FBXL3Q9UKT7 428 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 MOKQ9UQ07 419 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 PCDHB14Q9Y5E9 798 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 CORINQ9Y5Q5 1042 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 GMEB1Q9Y692 573 aa6.18□□□□□ -1.42
VPS41-208ENST00000448833 FBN1P35555 2871 aaKnown RBP6.18□□□□□ -1.42
VPS41-208ENST00000448833 COL6A5A8TX70 2615 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 TRAV36DV7A0A075B6V5 113 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 IGHV4-30-2A0A087WSY4 118 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 IGHV1-18A0A0C4DH31 117 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 TMEM229AB2RXF0 380 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 FTCDNL1E5RQL4 147 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 FRS3O43559 492 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 C8BP07358 591 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 NQO1P15559 274 aaKnown RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 CBR1P16152 277 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 SLC6A2P23975 617 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 RPS5P46782 204 aaKnown RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 ROR2Q01974 943 aaKnown RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 PLAURQ03405 335 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 BNIP2Q12982 314 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 MAPK11Q15759 364 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 EFNB3Q15768 340 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 HIKESHIQ53FT3 197 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 C4orf48Q5BLP8 95 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 ALG10BQ5I7T1 473 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 C6orf52Q5T4I8 152 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 REP15Q6BDI9 236 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 FAM166AQ6J272 317 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 EPGNQ6UW88 154 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 H1FNTQ75WM6 255 aaPredicted RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 SLC46A3Q7Z3Q1 461 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 SERPINA11Q86U17 422 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 RANBP3LQ86VV4 465 aaPredicted RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 EPHX4Q8IUS5 362 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 CLIP4Q8N3C7 705 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 ZNF525Q8N782 197 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 SCAIQ8N9R8 606 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 ADPRHL1Q8NDY3 354 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 NUP37Q8NFH4 326 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 LRRC8CQ8TDW0 803 aa6.17□□□□□ -1.42
VPS41-208ENST00000448833 NEU4Q8WWR8 484 aaPredicted RBP6.17□□□□□ -1.42
VPS41-208ENST00000448833 BCL2L2Q92843 193 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms