RNA–Protein interactions for RNA: YKL193C

SDS22, Transcript of Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p, yeast

Gene SDS22, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDS22	YKL193C	YBR284W	P38150	797 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	YHR020W	P38708	688 aa	Known RBP	4.77	□□□□□ -1.65
SDS22	YKL193C	GGA2	P38817	585 aa	Known RBP	4.77	□□□□□ -1.65
SDS22	YKL193C	NNF1	P47149	201 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	RIA1	P53893	1110 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	HDA1	P53973	706 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	YKR011C	Q02209	353 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	VPS30	Q02948	557 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	IRC13	Q08630	104 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	OSH2	Q12451	1283 aa		4.77	□□□□□ -1.65
SDS22	YKL193C	HSP60	P19882	572 aa	Known RBP	4.76	□□□□□ -1.65
SDS22	YKL193C	TYE7	P33122	291 aa	Predicted RBP	4.76	□□□□□ -1.65
SDS22	YKL193C	TOK1	P40310	691 aa		4.76	□□□□□ -1.65
SDS22	YKL193C	HUL5	P53119	910 aa		4.76	□□□□□ -1.65
SDS22	YKL193C	SEC5	P89102	971 aa		4.76	□□□□□ -1.65
SDS22	YKL193C	HBN1	Q96VH4	193 aa		4.76	□□□□□ -1.65
SDS22	YKL193C	CIT1	P00890	479 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	YHR078W	P38799	552 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	VHR1	P40522	640 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	YGR125W	P53273	1036 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	NSE3	Q05541	303 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	YPR071W	Q12346	211 aa		4.75	□□□□□ -1.65
SDS22	YKL193C	MSD1	P15179	658 aa	Known RBP	4.74	□□□□□ -1.65
SDS22	YKL193C	CDC11	P32458	415 aa		4.74	□□□□□ -1.65
SDS22	YKL193C	OCA5	P38738	679 aa		4.74	□□□□□ -1.65
SDS22	YKL193C	ASI2	P53895	289 aa		4.74	□□□□□ -1.65
SDS22	YKL193C	LCD1	Q04377	747 aa		4.74	□□□□□ -1.65
SDS22	YKL193C	FLC1	Q08967	793 aa		4.74	□□□□□ -1.65
SDS22	YKL193C	TOP3	P13099	656 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	PET10	P36139	283 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	CEP3	P40969	608 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	CCM1	P48237	864 aa	Predicted RBP	4.73	□□□□□ -1.65
SDS22	YKL193C	AMA1	P50082	593 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	TAF8	Q03750	510 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	CDC53	Q12018	815 aa	Known RBP	4.73	□□□□□ -1.65
SDS22	YKL193C	YOL098C	Q12496	1037 aa		4.73	□□□□□ -1.65
SDS22	YKL193C	EMP70	P32802	667 aa		4.72	□□□□□ -1.65
SDS22	YKL193C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.71	□□□□□ -1.66	not detected
SDS22	YKL193C	REC104	P33323	182 aa		4.71	□□□□□ -1.66
SDS22	YKL193C	RSP5	P39940	809 aa	Known RBP	4.71	□□□□□ -1.66
SDS22	YKL193C	YDL124W	Q07551	312 aa	Known RBP	4.71	□□□□□ -1.66
SDS22	YKL193C	SGO1	Q08490	590 aa		4.71	□□□□□ -1.66
SDS22	YKL193C	CAN1	P04817	590 aa		4.7	□□□□□ -1.66
SDS22	YKL193C	RFA1	P22336	621 aa	Known RBP	4.7	□□□□□ -1.66
SDS22	YKL193C	BET3	P36149	193 aa		4.7	□□□□□ -1.66
SDS22	YKL193C	CBR1	P38626	284 aa	Known RBP	4.7	□□□□□ -1.66
SDS22	YKL193C	HUL4	P40985	892 aa		4.7	□□□□□ -1.66
SDS22	YKL193C	CCT7	P42943	550 aa	Known RBP	4.7	□□□□□ -1.66
SDS22	YKL193C	RTA1	P53047	317 aa		4.7	□□□□□ -1.66
SDS22	YKL193C	ASM4	Q05166	528 aa		4.7	□□□□□ -1.66
SDS22	YKL193C	MRI1	Q06489	411 aa	Known RBP	4.7	□□□□□ -1.66
SDS22	YKL193C	GAL11	P19659	1081 aa		4.69	□□□□□ -1.66
SDS22	YKL193C	URA1	P28272	314 aa	Predicted RBP	4.69	□□□□□ -1.66
SDS22	YKL193C	YIR042C	P40586	236 aa		4.69	□□□□□ -1.66
SDS22	YKL193C	UBP6	P43593	499 aa	Known RBP	4.69	□□□□□ -1.66
SDS22	YKL193C	TAF3	Q12297	353 aa		4.69	□□□□□ -1.66
SDS22	YKL193C	DMC1	P25453	334 aa		4.68	□□□□□ -1.66
SDS22	YKL193C	SRP40	P32583	406 aa	Predicted RBP	4.68	□□□□□ -1.66
SDS22	YKL193C	SCT1	P32784	759 aa		4.68	□□□□□ -1.66
SDS22	YKL193C	SMX3	P54999	86 aa	Predicted RBP	4.68	□□□□□ -1.66
SDS22	YKL193C	APM1	Q00776	475 aa	Predicted RBP	4.68	□□□□□ -1.66
SDS22	YKL193C	ENV7	Q12003	364 aa		4.68	□□□□□ -1.66
SDS22	YKL193C	TOM70	P07213	617 aa	Known RBP	4.67	□□□□□ -1.66
SDS22	YKL193C	YKL091C	P33324	310 aa	Known RBP	4.67	□□□□□ -1.66
SDS22	YKL193C	HIS7	P33734	552 aa	Known RBP	4.67	□□□□□ -1.66
SDS22	YKL193C	YJL206C	P39529	758 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	FMP52	P40008	231 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	HOS4	P40480	1083 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	TEL2	P53038	688 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	PUS2	P53167	370 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	SSL2	Q00578	843 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	PKH1	Q03407	766 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	YOR131C	Q12486	218 aa		4.67	□□□□□ -1.66
SDS22	YKL193C	MPH2	P0CD99	609 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	SPO11	P23179	398 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	BCD1	P38772	366 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	GYP8	P43570	497 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	SCS3	P53012	380 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	DAM1	P53267	343 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	NRG1	Q03125	231 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	RPN4	Q03465	531 aa		4.66	□□□□□ -1.66
SDS22	YKL193C	MUS81	Q04149	632 aa	Predicted RBP	4.66	□□□□□ -1.66
SDS22	YKL193C	LAT1	P12695	482 aa	Known RBP	4.65	□□□□□ -1.67
SDS22	YKL193C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
SDS22	YKL193C	GAT1	P43574	510 aa		4.65	□□□□□ -1.67
SDS22	YKL193C	ERR1	P0CX10	437 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	ERR2	P0CX11	437 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	TIM23	P32897	222 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	EMC3	P36039	253 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	HSV2	P50079	448 aa	Predicted RBP	4.64	□□□□□ -1.67
SDS22	YKL193C	DUS1	P53759	423 aa	Known RBP	4.64	□□□□□ -1.67
SDS22	YKL193C	TGL5	Q12043	749 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	HAL9	Q12180	1030 aa		4.64	□□□□□ -1.67
SDS22	YKL193C	YLR415C	O13578	112 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	ORC2	P32833	620 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	UBS1	P38290	277 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	YEL020C	P39994	560 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	BUD6	P41697	788 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	ALG2	P43636	503 aa		4.63	□□□□□ -1.67
SDS22	YKL193C	NIT3	P49954	291 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 83.6 ms