RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	ENP1	P38333	483 aa	Known RBP	5.96	□□□□□ -1.46
CAF16	YFL028C	PCM1	P38628	557 aa	Known RBP	5.96	□□□□□ -1.46
CAF16	YFL028C	YKE2	P52553	114 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	RCM1	P53972	490 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	TRE2	Q08693	809 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	SEC6	P32844	805 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	DOT6	P40059	670 aa	Known RBP	5.95	□□□□□ -1.46
CAF16	YFL028C	YFL066C	P43538	392 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	ALY2	P47029	1046 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	NSG2	P53898	299 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	COG6	P53959	839 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	ATG33	Q06485	197 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.95	□□□□□ -1.46	not detected
CAF16	YFL028C	XYL2	Q07993	356 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	YOR059C	Q08448	450 aa	Known RBP	5.95	□□□□□ -1.46
CAF16	YFL028C	GUP2	Q08929	609 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	GIN4	Q12263	1142 aa		5.95	□□□□□ -1.46
CAF16	YFL028C	NUP188	P52593	1655 aa	Known RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	VMR1	P38735	1592 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	HMG1	P12683	1054 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	RPN10	P38886	268 aa	Known RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	CKB2	P38930	258 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	SLN1	P39928	1220 aa	Predicted RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	SND1	Q04007	877 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	LRS4	Q04087	347 aa	Known RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	COG8	Q04632	607 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	BUD21	Q08492	214 aa	Predicted RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	TRE1	Q08919	783 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	YDR215C	Q12240	137 aa		5.94	□□□□□ -1.46
CAF16	YFL028C	TMA7	Q3E764	64 aa	Known RBP	5.94	□□□□□ -1.46
CAF16	YFL028C	RPS9A	O13516	197 aa	Known RBP	5.93	□□□□□ -1.46
CAF16	YFL028C	NOT3	P06102	836 aa	Known RBP	5.93	□□□□□ -1.46
CAF16	YFL028C	YCL002C	P25565	263 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	URA1	P28272	314 aa	Predicted RBP	5.93	□□□□□ -1.46
CAF16	YFL028C	YAP1801	P38856	637 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	GTS1	P40956	396 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	CEP3	P40969	608 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	OYE3	P41816	400 aa	Predicted RBP	5.93	□□□□□ -1.46
CAF16	YFL028C	PEX14	P53112	341 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	NOG2	P53742	486 aa	Known RBP	5.93	□□□□□ -1.46
CAF16	YFL028C	NHX1	Q04121	633 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	SLX4	Q12098	748 aa		5.93	□□□□□ -1.46
CAF16	YFL028C	SPS1	P08458	490 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	SAP190	P36123	1033 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	TAT1	P38085	619 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	ECM21	P38167	1117 aa	Known RBP	5.92	□□□□□ -1.46
CAF16	YFL028C	RFC5	P38251	354 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	SAF1	P38352	637 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	PTC7	P38797	343 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	PEX7	P39108	375 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	SHR5	P41912	237 aa		5.92	□□□□□ -1.46
CAF16	YFL028C	GCN2	P15442	1659 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	YCK2	P23292	546 aa	Known RBP	5.91	□□□□□ -1.46
CAF16	YFL028C	APL1	P27351	700 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	RPC82	P32349	654 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	COQ2	P32378	372 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	TFC4	P33339	1025 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	YAP3	P38749	330 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	RLP7	P40693	322 aa	Known RBP	5.91	□□□□□ -1.46
CAF16	YFL028C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.91	□□□□□ -1.46	not detected
CAF16	YFL028C	UBC9	P50623	157 aa	Predicted RBP	5.91	□□□□□ -1.46
CAF16	YFL028C	YMR187C	Q03236	431 aa		5.91	□□□□□ -1.46
CAF16	YFL028C	YTM1	Q12024	460 aa	Predicted RBP	5.91	□□□□□ -1.46
CAF16	YFL028C	DIF1	O13577	133 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	CYS3	P31373	394 aa	Known RBP	5.9	□□□□□ -1.46
CAF16	YFL028C	SRP101	P32916	621 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	OAF1	P39720	1047 aa	Predicted RBP	5.9	□□□□□ -1.46
CAF16	YFL028C	DAS1	P47005	663 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	HXT16	P47185	567 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	CRR1	Q05790	422 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	NYV1	Q12255	253 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	NSI1	Q12457	570 aa		5.9	□□□□□ -1.46
CAF16	YFL028C	PDR5	P33302	1511 aa	Known RBP	5.89	□□□□□ -1.47
CAF16	YFL028C	PLC1	P32383	869 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	PMC1	P38929	1173 aa	Predicted RBP	5.89	□□□□□ -1.47
CAF16	YFL028C	GZF3	P42944	551 aa	Known RBP	5.89	□□□□□ -1.47
CAF16	YFL028C	YGR153W	P48238	217 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	VPS30	Q02948	557 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	YDR338C	Q05497	695 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	YOR378W	Q08902	515 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	IML1	P47170	1584 aa		5.89	□□□□□ -1.47
CAF16	YFL028C	PRC1	P00729	532 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	CHS2	P14180	963 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	MIH1	P23748	554 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	RPD3	P32561	433 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	STE13	P33894	931 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	HSL7	P38274	827 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	TDA3	P38758	523 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	RAI1	P53063	387 aa	Known RBP	5.88	□□□□□ -1.47
CAF16	YFL028C	PUS2	P53167	370 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	HDA1	P53973	706 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	SSY1	Q03770	852 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	MCA1	Q08601	432 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	YOR022C	Q12204	715 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	YBR182C-A	Q8TGU6	64 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	MPD2	Q99316	277 aa		5.88	□□□□□ -1.47
CAF16	YFL028C	KIN2	P13186	1147 aa	Known RBP	5.87	□□□□□ -1.47
CAF16	YFL028C	YEF3	P16521	1044 aa	Known RBP	5.87	□□□□□ -1.47
CAF16	YFL028C	MSB1	P21339	1137 aa	Known RBP	5.87	□□□□□ -1.47
CAF16	YFL028C	AEP2	P22136	580 aa		5.87	□□□□□ -1.47

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms