RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	RIF1	P29539	1916 aa		11.58	□□□□□ -0.56
VPS60	YDR486C	ADE4	P04046	510 aa	Known RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	HEM1	P09950	548 aa	Predicted RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	NAT1	P12945	854 aa	Known RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	POT1	P27796	417 aa	Known RBP RIP-Chip data	11.57	□□□□□ -0.56	not detected
VPS60	YDR486C	DRE2	P36152	348 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	CCC2	P38995	1004 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	ULI1	P43604	169 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	STU2	P46675	888 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	SMC3	P47037	1230 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	CPR7	P47103	393 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	RPA49	Q01080	415 aa	Predicted RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	UTP5	Q04177	643 aa	Known RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	YML082W	Q04533	649 aa	Known RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	ECM30	Q06673	1274 aa		11.57	□□□□□ -0.56
VPS60	YDR486C	IWR1	Q07532	353 aa	Predicted RBP	11.57	□□□□□ -0.56
VPS60	YDR486C	ASP3-2	P0CX77	362 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	ASP3-3	P0CX78	362 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	ASP3-4	P0CX79	362 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	ASP3-1	P0CZ17	362 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	CDC42	P19073	191 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	PRR1	P28708	518 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	CBF2	P32504	956 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	JNM1	P36224	373 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	DAS1	P47005	663 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	11.56	□□□□□ -0.56	not detected
VPS60	YDR486C	CLA4	P48562	842 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	GIS3	Q12418	502 aa		11.56	□□□□□ -0.56
VPS60	YDR486C	SEC23	P15303	768 aa	Known RBP	11.55	□□□□□ -0.56
VPS60	YDR486C	RPT1	P33299	467 aa	Known RBP	11.55	□□□□□ -0.56
VPS60	YDR486C	TRM2	P33753	639 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	UBX7	P38349	436 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	YAP1801	P38856	637 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	SEC9	P40357	651 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	LAM5	P43560	674 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	YNL134C	P53912	376 aa	Known RBP	11.55	□□□□□ -0.56
VPS60	YDR486C	YPL034W	Q03083	165 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	PPM1	Q04081	328 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	ESC2	Q06340	456 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	OPY2	Q06810	360 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	SGT2	Q12118	346 aa	Known RBP	11.55	□□□□□ -0.56
VPS60	YDR486C	PCD1	Q12524	340 aa		11.55	□□□□□ -0.56
VPS60	YDR486C	TRP2	P00899	507 aa	Known RBP	11.54	□□□□□ -0.56
VPS60	YDR486C	STO1	P34160	861 aa	Known RBP	11.54	□□□□□ -0.56
VPS60	YDR486C	PTC4	P38089	393 aa		11.54	□□□□□ -0.56
VPS60	YDR486C	HXT8	P40886	569 aa		11.54	□□□□□ -0.56
VPS60	YDR486C	VPS70	P47161	811 aa		11.54	□□□□□ -0.56
VPS60	YDR486C	LDB19	Q12502	818 aa		11.54	□□□□□ -0.56
VPS60	YDR486C	RAD57	P25301	460 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	SCJ1	P25303	377 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	DAL2	P25335	343 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	FUB1	P25659	250 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	TRZ1	P36159	838 aa	Predicted RBP	11.53	□□□□□ -0.56
VPS60	YDR486C	YER186C	P40101	306 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	EFM4	P40516	257 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	ISM1	P48526	1002 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	GCV2	P49095	1034 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	YNL115C	P53925	644 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	CWC21	Q03375	135 aa	Known RBP	11.53	□□□□□ -0.56
VPS60	YDR486C	PIB1	Q06651	286 aa		11.53	□□□□□ -0.56
VPS60	YDR486C	TSR1	Q07381	788 aa	Known RBP	11.53	□□□□□ -0.56
VPS60	YDR486C	ABP140	Q08641	628 aa	Known RBP	11.53	□□□□□ -0.56
VPS60	YDR486C	SDH2	P21801	266 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	RRT12	P25381	491 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	BUD2	P33314	1104 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	CSG2	P35206	410 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	YMR124W	P39523	943 aa	Known RBP	11.52	□□□□□ -0.57
VPS60	YDR486C	ALG11	P53954	548 aa	Known RBP	11.52	□□□□□ -0.57
VPS60	YDR486C	FMP30	Q02883	468 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	STE20	Q03497	939 aa	Known RBP	11.52	□□□□□ -0.57
VPS60	YDR486C	OSH2	Q12451	1283 aa		11.52	□□□□□ -0.57
VPS60	YDR486C	SPT2	P06843	333 aa	Predicted RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	CDC33	P07260	213 aa	Known RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	PET123	P17558	318 aa		11.51	□□□□□ -0.57
VPS60	YDR486C	COX11	P19516	300 aa	Known RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	MCX1	P38323	520 aa	Predicted RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	YHL026C	P38740	315 aa		11.51	□□□□□ -0.57
VPS60	YDR486C	SET5	P38890	526 aa	Known RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	CAJ1	P39101	391 aa		11.51	□□□□□ -0.57
VPS60	YDR486C	SBE2	P42223	864 aa	Known RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	APT1	P49435	187 aa	Known RBP	11.51	□□□□□ -0.57
VPS60	YDR486C	ECM3	Q99252	613 aa		11.51	□□□□□ -0.57
VPS60	YDR486C	AI5_BETA	Q9ZZX0	354 aa		11.51	□□□□□ -0.57
VPS60	YDR486C	AVT3	P36062	692 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	EXO5	P38289	585 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	YHR054C	P38780	354 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	SNU56	Q03782	492 aa	Known RBP	11.5	□□□□□ -0.57
VPS60	YDR486C	SOV1	Q04748	898 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	YLR001C	Q07895	862 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	SIL1	Q08199	421 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	DAS2	Q12084	232 aa		11.5	□□□□□ -0.57
VPS60	YDR486C	PUS1	Q12211	544 aa	Known RBP	11.5	□□□□□ -0.57
VPS60	YDR486C	SNF1	P06782	633 aa	Known RBP	11.49	□□□□□ -0.57
VPS60	YDR486C	RNR1	P21524	888 aa	Known RBP	11.49	□□□□□ -0.57
VPS60	YDR486C	HXT1	P32465	570 aa		11.49	□□□□□ -0.57
VPS60	YDR486C	BRL1	P38770	471 aa		11.49	□□□□□ -0.57
VPS60	YDR486C	SAH1	P39954	449 aa	Known RBP	11.49	□□□□□ -0.57
VPS60	YDR486C	ZAP1	P47043	880 aa		11.49	□□□□□ -0.57
VPS60	YDR486C	DRN1	P53255	507 aa	Known RBP	11.49	□□□□□ -0.57
VPS60	YDR486C	CDD1	Q06549	142 aa		11.49	□□□□□ -0.57

Retrieved 100 of 5,963 RNA–protein pairs in 42.8 ms