RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 CCDC85CA6NKD9 419 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 HCLS1P14317 486 aaPredicted RBP20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 KIAA2012Q0VF49 1180 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 TNIP1Q15025 636 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 FAM161AQ3B820 660 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 DDX46Q7L014 1031 aaKnown RBP20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 GLIS2Q9BZE0 524 aaPredicted RBP20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 TSKSQ9UJT2 592 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 TAF1P21675 1872 aa20.54■□□□□ 0.88
PDLIM3-213ENST00000629667 RAD17O75943 681 aa20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 RIPK4P57078 832 aa20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 AIMP1Q12904 312 aaKnown RBP20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 COPS6Q7L5N1 327 aa20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 NLRP10Q86W26 655 aa20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 ZNF408Q9H9D4 720 aa20.53■□□□□ 0.88
PDLIM3-213ENST00000629667 ZC3H15Q8WU90 426 aaKnown RBP20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 NECTIN2Q92692 538 aa20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 HHIPL1Q96JK4 782 aa20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 BABAM1Q9NWV8 329 aa20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 PGAP2Q9UHJ9 254 aa20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 TRMT112Q9UI30 125 aaKnown RBP20.52■□□□□ 0.88
PDLIM3-213ENST00000629667 CA12O43570 354 aa20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 GRAPQ13588 217 aa20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 CDC37L1Q7L3B6 337 aa20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 GRAPLQ8TC17 118 aaPredicted RBP20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 XAGE3Q8WTP9 111 aa20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 SH3TC1Q8TE82 1336 aa20.51■□□□□ 0.87
PDLIM3-213ENST00000629667 HIRAP54198 1017 aaPredicted RBP20.5■□□□□ 0.87
PDLIM3-213ENST00000629667 TCIRG1Q13488 830 aa20.5■□□□□ 0.87
PDLIM3-213ENST00000629667 CNOT7Q9UIV1 285 aaKnown RBP20.5■□□□□ 0.87
PDLIM3-213ENST00000629667 CASP8AP2Q9UKL3 1982 aa20.5■□□□□ 0.87
PDLIM3-213ENST00000629667 H7C1D1 291 aa20.49■□□□□ 0.87
PDLIM3-213ENST00000629667 LMOD3Q0VAK6 560 aa20.49■□□□□ 0.87
PDLIM3-213ENST00000629667 TMC4Q7Z404 712 aa20.49■□□□□ 0.87
PDLIM3-213ENST00000629667 TRPM4Q8TD43 1214 aa20.49■□□□□ 0.87
PDLIM3-213ENST00000629667 BRPF1P55201 1214 aaPredicted RBP20.48■□□□□ 0.87
PDLIM3-213ENST00000629667 MLLT1Q03111 559 aaPredicted RBP20.48■□□□□ 0.87
PDLIM3-213ENST00000629667 LRRC37AA6NMS7 1700 aa20.47■□□□□ 0.87
PDLIM3-213ENST00000629667 YDJCA8MPS7 323 aa20.47■□□□□ 0.87
PDLIM3-213ENST00000629667 DDX60Q8IY21 1712 aaKnown RBP20.47■□□□□ 0.87
PDLIM3-213ENST00000629667 DUOX1Q9NRD9 1551 aa20.46■□□□□ 0.87
PDLIM3-213ENST00000629667 TMPOP42166 694 aaKnown RBP20.46■□□□□ 0.87
PDLIM3-213ENST00000629667 MICALL2Q8IY33 904 aa20.46■□□□□ 0.87
PDLIM3-213ENST00000629667 POLR2AP24928 1970 aaKnown RBP20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 SHTN1A0MZ66 631 aa20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 WASHC4Q2M389 1173 aa20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 USP48Q86UV5 1035 aa20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 ZNF428Q96B54 188 aa20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 CFAP44Q96MT7 982 aa20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 ZBTB12Q9Y330 459 aaPredicted RBP20.45■□□□□ 0.86
PDLIM3-213ENST00000629667 RGS19P49795 217 aa20.44■□□□□ 0.86
PDLIM3-213ENST00000629667 NOGQ13253 232 aa20.44■□□□□ 0.86
PDLIM3-213ENST00000629667 DPF2Q92785 391 aa20.44■□□□□ 0.86
PDLIM3-213ENST00000629667 MCOLN1Q9GZU1 580 aa20.44■□□□□ 0.86
PDLIM3-213ENST00000629667 NSFL1CQ9UNZ2 370 aaKnown RBP20.44■□□□□ 0.86
PDLIM3-213ENST00000629667 HUNKP57058 714 aa20.43■□□□□ 0.86
PDLIM3-213ENST00000629667 SAMD7Q7Z3H4 446 aa20.43■□□□□ 0.86
PDLIM3-213ENST00000629667 DBNDD1Q9H9R9 158 aa20.43■□□□□ 0.86
PDLIM3-213ENST00000629667 CHPF2Q9P2E5 772 aa20.43■□□□□ 0.86
PDLIM3-213ENST00000629667 C6orf229H3BNL8 230 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 PSMD14O00487 310 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 RIMBP2O15034 1052 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 NEUROD2Q15784 382 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 KRT24Q2M2I5 525 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 PLBD2Q8NHP8 589 aa20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 LAS1LQ9Y4W2 734 aaKnown RBP20.42■□□□□ 0.86
PDLIM3-213ENST00000629667 SLC34A2O95436 690 aa20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 DGKZQ13574 1117 aa20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 TBC1D10BQ4KMP7 808 aaPredicted RBP20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 ANKRD13DQ6ZTN6 518 aa20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 CELF1Q92879 486 aaKnown RBP20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 FAM89AQ96GI7 184 aa20.41■□□□□ 0.86
PDLIM3-213ENST00000629667 CHL1O00533 1208 aa20.4■□□□□ 0.86
PDLIM3-213ENST00000629667 SF3B3Q15393 1217 aaKnown RBP20.4■□□□□ 0.86
PDLIM3-213ENST00000629667 HDGFL1Q5TGJ6 251 aa20.4■□□□□ 0.86
PDLIM3-213ENST00000629667 KRT26Q7Z3Y9 468 aa20.4■□□□□ 0.86
PDLIM3-213ENST00000629667 ATP5J2-PTCD1G3V325 749 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 RPS12P25398 132 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 RALBP1Q15311 655 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 RBM26Q5T8P6 1007 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 DLK2Q6UY11 383 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 C2orf69Q8N8R5 385 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 DCPSQ96C86 337 aaKnown RBP20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 ZIC5Q96T25 663 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 EYA3Q99504 573 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 ISCA1Q9BUE6 129 aa20.39■□□□□ 0.85
PDLIM3-213ENST00000629667 ECE2O60344 883 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 GPSM2P81274 684 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 DOK7Q18PE1 504 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 RTL5Q5HYW3 569 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 RGMBQ6NW40 437 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 CCDC146Q8IYE0 955 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 GBA2Q9HCG7 927 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 DBF4Q9UBU7 674 aaPredicted RBP20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 POLLQ9UGP5 575 aa20.38■□□□□ 0.85
PDLIM3-213ENST00000629667 EGFRP00533 1210 aa20.37■□□□□ 0.85
PDLIM3-213ENST00000629667 AKAP11Q9UKA4 1901 aa20.37■□□□□ 0.85
PDLIM3-213ENST00000629667 ADM5C9JUS6 153 aa20.36■□□□□ 0.85
PDLIM3-213ENST00000629667 HOXB7P09629 217 aa20.36■□□□□ 0.85
PDLIM3-213ENST00000629667 CCDC102AQ96A19 550 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms