RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 MTHFSDQ2M296 383 aaKnown RBP8.52□□□□□ -1.05
TCF4-249ENST00000625716 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.52□□□□□ -1.05
TCF4-249ENST00000625716 GAS2L2Q8NHY3 880 aa8.52□□□□□ -1.05
TCF4-249ENST00000625716 HLA-CQ95604 372 aa8.52□□□□□ -1.05
TCF4-249ENST00000625716 ARXQ96QS3 562 aa8.52□□□□□ -1.05
TCF4-249ENST00000625716 FCF1Q9Y324 198 aaKnown RBP8.52□□□□□ -1.05
TCF4-249ENST00000625716 PAPPAQ13219 1627 aa8.51□□□□□ -1.05
TCF4-249ENST00000625716 RNMTO43148 476 aaKnown RBP8.51□□□□□ -1.05
TCF4-249ENST00000625716 PTCD1O75127 700 aaKnown RBP8.51□□□□□ -1.05
TCF4-249ENST00000625716 COL23A1Q86Y22 540 aaPredicted RBP8.51□□□□□ -1.05
TCF4-249ENST00000625716 CCDC102AQ96A19 550 aa8.51□□□□□ -1.05
TCF4-249ENST00000625716 SLC52A2Q9HAB3 445 aa8.51□□□□□ -1.05
TCF4-249ENST00000625716 LY75O60449 1722 aa8.51□□□□□ -1.05
TCF4-249ENST00000625716 CASZ1Q86V15 1759 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 ITGB4P16144 1822 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 GNAT3A8MTJ3 354 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 KDM6AO15550 1401 aaPredicted RBP8.5□□□□□ -1.05
TCF4-249ENST00000625716 DGAT1O75907 488 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 PRKAR2BP31323 418 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 RPIAP49247 311 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 TEFQ10587 303 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 RALBP1Q15311 655 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 LINC00116Q8NCU8 138 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 LGR6Q9HBX8 967 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 TOGARAM1Q9Y4F4 1720 aa8.5□□□□□ -1.05
TCF4-249ENST00000625716 SSFA2P28290 1259 aa8.49□□□□□ -1.05
TCF4-249ENST00000625716 ITPK1Q13572 414 aa8.49□□□□□ -1.05
TCF4-249ENST00000625716 MSS51Q4VC12 460 aa8.49□□□□□ -1.05
TCF4-249ENST00000625716 TRAPPC3LQ5T215 181 aa8.49□□□□□ -1.05
TCF4-249ENST00000625716 TTC5Q8N0Z6 440 aa8.49□□□□□ -1.05
TCF4-249ENST00000625716 RTF1Q92541 710 aaKnown RBP8.49□□□□□ -1.05
TCF4-249ENST00000625716 FHDC1Q9C0D6 1143 aaPredicted RBP8.49□□□□□ -1.05
TCF4-249ENST00000625716 PNNQ9H307 717 aaKnown RBP8.49□□□□□ -1.05
TCF4-249ENST00000625716 RTCBQ9Y3I0 505 aaKnown RBP8.49□□□□□ -1.05
TCF4-249ENST00000625716 COL3A1P02461 1466 aaPredicted RBP8.49□□□□□ -1.05
TCF4-249ENST00000625716 MAP3K5Q99683 1374 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 POTECB2RU33 542 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 KDM4AO75164 1064 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 RC3H1Q5TC82 1133 aaKnown RBP8.48□□□□□ -1.05
TCF4-249ENST00000625716 MSL1Q68DK7 614 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 ZNF787Q6DD87 383 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 SYT17Q9BSW7 474 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 RSPH6AQ9H0K4 717 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 C5P01031 1676 aa8.48□□□□□ -1.05
TCF4-249ENST00000625716 RFC4P35249 363 aa8.47□□□□□ -1.05
TCF4-249ENST00000625716 FOXC1Q12948 553 aa8.47□□□□□ -1.05
TCF4-249ENST00000625716 SLC39A6Q13433 755 aa8.47□□□□□ -1.05
TCF4-249ENST00000625716 PKDCCQ504Y2 493 aa8.47□□□□□ -1.05
TCF4-249ENST00000625716 PHACTR3Q96KR7 559 aa8.47□□□□□ -1.05
TCF4-249ENST00000625716 REPIN1Q9BWE0 567 aaKnown RBP8.47□□□□□ -1.05
TCF4-249ENST00000625716 C4BP0C0L5 1744 aa8.46□□□□□ -1.05
TCF4-249ENST00000625716 FAM187AA6NFU0 413 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 RPS6KA4O75676 772 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 MMP16P51512 607 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 GRIPAP1Q4V328 841 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 SMIM5Q71RC9 77 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 SLC4A9Q96Q91 983 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 FAM217BQ9NTX9 383 aaPredicted RBP8.46□□□□□ -1.06
TCF4-249ENST00000625716 CNTNAP4Q9C0A0 1308 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 MAPK8IP3Q9UPT6 1336 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 QSER1Q2KHR3 1735 aa8.46□□□□□ -1.06
TCF4-249ENST00000625716 BTBD11A6QL63 1104 aa8.45□□□□□ -1.06
TCF4-249ENST00000625716 TULP1O00294 542 aaPredicted RBP8.45□□□□□ -1.06
TCF4-249ENST00000625716 HTATSF1O43719 755 aaKnown RBP8.45□□□□□ -1.06
TCF4-249ENST00000625716 CRKLP46109 303 aaKnown RBP8.45□□□□□ -1.06
TCF4-249ENST00000625716 GPR162Q16538 588 aa8.45□□□□□ -1.06
TCF4-249ENST00000625716 NLGN1Q8N2Q7 840 aa8.45□□□□□ -1.06
TCF4-249ENST00000625716 IL17REQ8NFR9 667 aa8.45□□□□□ -1.06
TCF4-249ENST00000625716 TEX13AQ9BXU3 409 aaPredicted RBP8.45□□□□□ -1.06
TCF4-249ENST00000625716 TOR4AQ9NXH8 423 aa8.45□□□□□ -1.06
TCF4-249ENST00000625716 MYBBP1AQ9BQG0 1328 aaKnown RBP8.45□□□□□ -1.06
TCF4-249ENST00000625716 HOXA2O43364 376 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 CD2BP2O95400 341 aaKnown RBP8.44□□□□□ -1.06
TCF4-249ENST00000625716 STARD3NLO95772 234 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 GUCA2AQ02747 115 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 ZNF790Q6PG37 636 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 NPM2Q86SE8 214 aaKnown RBP8.44□□□□□ -1.06
TCF4-249ENST00000625716 AMIGO3Q86WK7 504 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 DNAJC10Q8IXB1 793 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 GPCPD1Q9NPB8 672 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 CCDC87Q9NVE4 849 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 TAF1LQ8IZX4 1826 aa8.44□□□□□ -1.06
TCF4-249ENST00000625716 SCN11AQ9UI33 1791 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 ST8SIA5O15466 376 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 WDR43Q15061 677 aaKnown RBP eCLIP8.43□□□□□ -1.06
TCF4-249ENST00000625716 Q3C1V9 767 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 MCM10Q7L590 875 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 FMNL2Q96PY5 1086 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 USB1Q9BQ65 265 aaKnown RBP8.43□□□□□ -1.06
TCF4-249ENST00000625716 CD2APQ9Y5K6 639 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 PARP3Q9Y6F1 533 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 MRC1P22897 1456 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 TUBGCP6Q96RT7 1819 aa8.43□□□□□ -1.06
TCF4-249ENST00000625716 DXOO77932 396 aaKnown RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 MMP10P09238 476 aa8.42□□□□□ -1.06
TCF4-249ENST00000625716 CYP19A1P11511 503 aaPredicted RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 YY1P25490 414 aa8.42□□□□□ -1.06
TCF4-249ENST00000625716 CANXP27824 592 aaKnown RBP8.42□□□□□ -1.06
TCF4-249ENST00000625716 USP46P62068 366 aa8.42□□□□□ -1.06
TCF4-249ENST00000625716 NFE2L2Q16236 605 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms