RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 RGPD1P0DJD0 1748 aa18.85■□□□□ 0.61
CPSF1-213ENST00000620219 VPS72Q15906 364 aa18.84■□□□□ 0.61
CPSF1-213ENST00000620219 CDC5LQ99459 802 aaKnown RBP18.84■□□□□ 0.61
CPSF1-213ENST00000620219 PPP1R1BQ9UD71 204 aaPredicted RBP18.84■□□□□ 0.61
CPSF1-213ENST00000620219 SF3B2Q13435 895 aaKnown RBP18.84■□□□□ 0.61
CPSF1-213ENST00000620219 PCCAP05165 728 aaPredicted RBP18.84■□□□□ 0.61
CPSF1-213ENST00000620219 RAI14Q9P0K7 980 aa18.84■□□□□ 0.61
CPSF1-213ENST00000620219 KDM4AO75164 1064 aa18.84■□□□□ 0.61
CPSF1-213ENST00000620219 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.84■□□□□ 0.612e-10■■■■■ 32.8
CPSF1-213ENST00000620219 SLC5A1P13866 664 aa18.83■□□□□ 0.61
CPSF1-213ENST00000620219 CYP46A1Q9Y6A2 500 aa18.83■□□□□ 0.61
CPSF1-213ENST00000620219 TPTE2Q6XPS3 522 aa18.83■□□□□ 0.6
CPSF1-213ENST00000620219 ANKRD18AQ8IVF6 992 aa18.83■□□□□ 0.6
CPSF1-213ENST00000620219 H7C1W4 665 aa18.83■□□□□ 0.6
CPSF1-213ENST00000620219 FAM196AQ6ZSG2 479 aa18.83■□□□□ 0.6
CPSF1-213ENST00000620219 COPRSQ9NQ92 184 aa18.83■□□□□ 0.6
CPSF1-213ENST00000620219 CTSWP56202 376 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 CCDC129Q6ZRS4 1044 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 DBNLQ9UJU6 430 aaKnown RBP18.82■□□□□ 0.6
CPSF1-213ENST00000620219 ITPK1Q13572 414 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 CPA1P15085 419 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 RRP12Q5JTH9 1297 aaKnown RBP18.82■□□□□ 0.6
CPSF1-213ENST00000620219 PAG1Q9NWQ8 432 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 JAG2Q9Y219 1238 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 RGPD5Q99666 1765 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 GSE1Q14687 1217 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 SEC31BQ9NQW1 1179 aa18.82■□□□□ 0.6
CPSF1-213ENST00000620219 GNL3LQ9NVN8 582 aaKnown RBP18.82■□□□□ 0.6
CPSF1-213ENST00000620219 VPS37CA5D8V6 355 aaPredicted RBP18.81■□□□□ 0.6
CPSF1-213ENST00000620219 APBA3O96018 575 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 HAND2P61296 217 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 TRDNQ13061 729 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 RALYLQ86SE5 291 aaKnown RBP18.81■□□□□ 0.6
CPSF1-213ENST00000620219 XAGE2Q96GT9 111 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 ISY1Q9ULR0 285 aaKnown RBP18.81■□□□□ 0.6
CPSF1-213ENST00000620219 PARP10Q53GL7 1025 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 SUSD4Q5VX71 490 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 SMC3Q9UQE7 1217 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 BLOC1S2Q6QNY1 142 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 WWC3Q9ULE0 1092 aa18.81■□□□□ 0.6
CPSF1-213ENST00000620219 SNAP23O00161 211 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 KRT27Q7Z3Y8 459 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 RPGRQ92834 1020 aaKnown RBP18.8■□□□□ 0.6
CPSF1-213ENST00000620219 PALD1Q9ULE6 856 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 PSMA5P28066 241 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 PTF1AQ7RTS3 328 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 KAZALD1Q96I82 304 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 PDRG1Q9NUG6 133 aa18.8■□□□□ 0.6
CPSF1-213ENST00000620219 RTN4Q9NQC3 1192 aaKnown RBP18.79■□□□□ 0.6
CPSF1-213ENST00000620219 RBM8AQ9Y5S9 174 aaKnown RBP18.79■□□□□ 0.6
CPSF1-213ENST00000620219 STRCP1A6NGW2 1772 aa18.79■□□□□ 0.6
CPSF1-213ENST00000620219 SLC4A9Q96Q91 983 aa18.79■□□□□ 0.6
CPSF1-213ENST00000620219 SSFA2P28290 1259 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 ADORA1P30542 326 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 CAVIN4Q5BKX8 364 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 AIDAQ96BJ3 306 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 PPFIA3O75145 1194 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 SPATA31A6Q5VVP1 1343 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 MTX1Q13505 466 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 BARGINQ6ZT62 677 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 ZGPATQ8N5A5 531 aaKnown RBP18.78■□□□□ 0.6
CPSF1-213ENST00000620219 FAM184AQ8NB25 1140 aa18.78■□□□□ 0.6
CPSF1-213ENST00000620219 MCTP1Q6DN14 999 aa18.77■□□□□ 0.6
CPSF1-213ENST00000620219 SEC62Q99442 399 aaKnown RBP18.77■□□□□ 0.6
CPSF1-213ENST00000620219 STAP2Q9UGK3 403 aa18.77■□□□□ 0.6
CPSF1-213ENST00000620219 LRRC2Q9BYS8 371 aa18.77■□□□□ 0.6
CPSF1-213ENST00000620219 OSBPL3Q9H4L5 887 aa18.77■□□□□ 0.6
CPSF1-213ENST00000620219 ISCA1Q9BUE6 129 aa18.77■□□□□ 0.59
CPSF1-213ENST00000620219 SLC9C2Q5TAH2 1124 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 GOLGA6L4A6NEF3 574 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 CHMP4CQ96CF2 233 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 SGSM2O43147 1006 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 MCM4P33991 863 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 TTLL11Q8NHH1 800 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 PI16Q6UXB8 463 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 PI4K2BQ8TCG2 481 aa18.76■□□□□ 0.59
CPSF1-213ENST00000620219 NFXL1Q6ZNB6 911 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 CNBD1Q8NA66 436 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.75■□□□□ 0.59
CPSF1-213ENST00000620219 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.75■□□□□ 0.59
CPSF1-213ENST00000620219 FOXO4P98177 505 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 ERFEQ4G0M1 354 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 TNPO1Q92973 898 aaKnown RBP18.75■□□□□ 0.59
CPSF1-213ENST00000620219 C6orf229H3BNL8 230 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 CCDC83Q8IWF9 413 aa18.75■□□□□ 0.59
CPSF1-213ENST00000620219 H3BQV1 296 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 ZAP70P43403 619 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 IFFO2Q5TF58 517 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 NYXQ9GZU5 481 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 GNL2Q13823 731 aaKnown RBP18.74■□□□□ 0.59
CPSF1-213ENST00000620219 ZSCAN25Q6NSZ9 544 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 IL25Q9H293 177 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 NSFL1CQ9UNZ2 370 aaKnown RBP18.74■□□□□ 0.59
CPSF1-213ENST00000620219 MTMR7Q9Y216 660 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 DDX49Q9Y6V7 483 aaKnown RBP18.74■□□□□ 0.59
CPSF1-213ENST00000620219 STRCQ7RTU9 1775 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 A0A0D9SFI3 127 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 SLC4A8Q2Y0W8 1093 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 MSL1Q68DK7 614 aa18.74■□□□□ 0.59
CPSF1-213ENST00000620219 ERVV-1B6SEH8 477 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms