RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-208	ENST00000578525	ZNF609	O15014	1411 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	STX6	O43752	255 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	IL15	P40933	162 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ANKRD1	Q15327	319 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TSGA10IP	Q3SY00	556 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	BLOC1S2	Q6QNY1	142 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	LRSAM1	Q6UWE0	723 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TICAM2	Q86XR7	235 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	DDX54	Q8TDD1	881 aa	Known RBP	11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ANP32B	Q92688	251 aa	Known RBP	11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	SYAP1	Q96A49	352 aa	Predicted RBP	11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	CHMP3	Q9Y3E7	222 aa		11.18	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	PALLD	Q8WX93	1383 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TAF5L	O75529	589 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	CIAO1	O76071	339 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	F13A1	P00488	732 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	SYT1	P21579	422 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	RPS6KB1	P23443	525 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	GJB2	P29033	226 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ST3GAL1	Q11201	340 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	KRT32	Q14532	448 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	USPL1	Q5W0Q7	1092 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ATG9A	Q7Z3C6	839 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	EDC3	Q96F86	508 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	LARP6	Q9BRS8	491 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ISCA1	Q9BUE6	129 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ZBTB3	Q9H5J0	574 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ATG3	Q9NT62	314 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TMOD3	Q9NYL9	352 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525		U3KPZ7	1027 aa	Predicted RBP	11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	LRP6	O75581	1613 aa		11.17	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	SPEF2	Q9C093	1822 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	COL14A1	Q05707	1796 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	SH3TC1	Q8TE82	1336 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	EYA2	O00167	538 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	PDIA4	P13667	645 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ME3	Q16798	604 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	USP48	Q86UV5	1035 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	KBTBD3	Q8NAB2	608 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TRIM44	Q96DX7	344 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	DNAJC2	Q99543	621 aa	Known RBP	11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	RBSN	Q9H1K0	784 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	ATP6V1D	Q9Y5K8	247 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	PLCH1	Q4KWH8	1693 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	DISP2	A7MBM2	1401 aa		11.16	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	PRIM1	P49642	420 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TRIM28	Q13263	835 aa	Known RBP	11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TCIRG1	Q13488	830 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	CSPP1	Q1MSJ5	1256 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	MCMDC2	Q4G0Z9	681 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	VSIG10	Q8N0Z9	540 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	FBXO3	Q9UK99	471 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	TPCN1	Q9ULQ1	816 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	MTMR6	Q9Y217	621 aa		11.15	□□□□□ -0.62
CDK5RAP3-208	ENST00000578525	SYCE3	A1L190	88 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	GADD45B	O75293	160 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PHF14	O94880	888 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PCCA	P05165	728 aa	Predicted RBP	11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	CLCN1	P35523	988 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	KIF6	Q6ZMV9	814 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PLA2G12B	Q9BX93	195 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	HELLS	Q9NRZ9	838 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	CNPY2	Q9Y2B0	182 aa		11.14	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	ESPN	B1AK53	854 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	TOB2	Q14106	344 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	LRRC24	Q50LG9	513 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	DDX46	Q7L014	1031 aa	Known RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	DNAJC10	Q8IXB1	793 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	NECAB1	Q8N987	351 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	NEUROD6	Q96NK8	337 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	NEK1	Q96PY6	1258 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	TSPY26P	Q9H489	355 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	GDPD2	Q9HCC8	539 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PAG1	Q9NWQ8	432 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	ITGB4	P16144	1822 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	WNK3	Q9BYP7	1800 aa		11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.13	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	KDM4F	A0A1W2PPD8	638 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	GOLIM4	O00461	696 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PDC	P20941	246 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	UBE2H	P62256	183 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	ZMYM1	Q5SVZ6	1142 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	CCDC183	Q5T5S1	534 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	CCDC129	Q6ZRS4	1044 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	KLHL34	Q8N239	644 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	PIGB	Q92521	554 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	ZNF594	Q96JF6	807 aa	Predicted RBP	11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	DSCC1	Q9BVC3	393 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	CEP126	Q9P2H0	1117 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	TAF6L	Q9Y6J9	622 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	NDUFB9	Q9Y6M9	179 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	ANKRD36C	Q5JPF3	1778 aa		11.12	□□□□□ -0.63
CDK5RAP3-208	ENST00000578525	MAP3K15	Q6ZN16	1313 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms