RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LRRC4BQ9NT99 713 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 SHISA8B8ZZ34 492 aa8.5□□□□□ -1.05
SCFD1-221ENST00000556534 ARHGEF15O94989 841 aa8.5□□□□□ -1.05
SCFD1-221ENST00000556534 MAP3K6O95382 1288 aa8.5□□□□□ -1.05
SCFD1-221ENST00000556534 GJD3Q8N144 294 aa8.5□□□□□ -1.05
SCFD1-221ENST00000556534 ADARB2-AS1A8MUL3 147 aa8.49□□□□□ -1.05
SCFD1-221ENST00000556534 RARAP10276 462 aa8.49□□□□□ -1.05
SCFD1-221ENST00000556534 TARSP26639 723 aaKnown RBP8.49□□□□□ -1.05
SCFD1-221ENST00000556534 AAMPQ13685 434 aa8.49□□□□□ -1.05
SCFD1-221ENST00000556534 NLRP13Q86W25 1043 aa8.49□□□□□ -1.05
SCFD1-221ENST00000556534 GGNBP2Q9H3C7 697 aa8.49□□□□□ -1.05
SCFD1-221ENST00000556534 A6NHS1 94 aa8.48□□□□□ -1.05
SCFD1-221ENST00000556534 RPLP1P05386 114 aaKnown RBP8.48□□□□□ -1.05
SCFD1-221ENST00000556534 MAP3K10Q02779 954 aa8.48□□□□□ -1.05
SCFD1-221ENST00000556534 PDE12Q6L8Q7 609 aaKnown RBP8.48□□□□□ -1.05
SCFD1-221ENST00000556534 EDARADDQ8WWZ3 215 aa8.48□□□□□ -1.05
SCFD1-221ENST00000556534 FNDC3AQ9Y2H6 1198 aaKnown RBP8.48□□□□□ -1.05
SCFD1-221ENST00000556534 ELOA3CA0A087WX78 387 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-221ENST00000556534 ELOA3DA6NLF2 546 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-221ENST00000556534 MMP20O60882 483 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 PCSK2P16519 638 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 ADH7P40394 386 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 ELOA3BQ3SY89 546 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 DHX32Q7L7V1 743 aaKnown RBP8.47□□□□□ -1.05
SCFD1-221ENST00000556534 GALNT6Q8NCL4 622 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 ELOA3Q8NG57 546 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 BIN2Q9UBW5 565 aaPredicted RBP8.47□□□□□ -1.05
SCFD1-221ENST00000556534 BRPF3Q9ULD4 1205 aa8.47□□□□□ -1.05
SCFD1-221ENST00000556534 NDUFB5O43674 189 aa8.46□□□□□ -1.06
SCFD1-221ENST00000556534 HOXD8P13378 290 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-221ENST00000556534 USP5P45974 858 aa8.46□□□□□ -1.06
SCFD1-221ENST00000556534 XKR5Q6UX68 686 aa8.46□□□□□ -1.06
SCFD1-221ENST00000556534 FAM129BQ96TA1 746 aa8.46□□□□□ -1.06
SCFD1-221ENST00000556534 UBE2OQ9C0C9 1292 aaKnown RBP8.46□□□□□ -1.06
SCFD1-221ENST00000556534 DNAJB12Q9NXW2 375 aaKnown RBP8.46□□□□□ -1.06
SCFD1-221ENST00000556534 TLR7Q9NYK1 1049 aaKnown RBP8.46□□□□□ -1.06
SCFD1-221ENST00000556534 TMEM63CQ9P1W3 806 aa8.46□□□□□ -1.06
SCFD1-221ENST00000556534 SOX18P35713 384 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 GPLD1P80108 840 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 C8orf34Q49A92 452 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 SND1Q7KZF4 910 aaKnown RBP eCLIP8.45□□□□□ -1.06
SCFD1-221ENST00000556534 ZNF438Q7Z4V0 828 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 ELP3Q9H9T3 547 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 NAGPAQ9UK23 515 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 SLC6A14Q9UN76 642 aa8.45□□□□□ -1.06
SCFD1-221ENST00000556534 IGHA2P01877 340 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 HOXB4P17483 251 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-221ENST00000556534 NRLP54845 237 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 TBC1D8BQ0IIM8 1120 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 OR13H1Q8NG92 308 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 TRPM4Q8TD43 1214 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 ABI2Q9NYB9 513 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-221ENST00000556534 STARD13Q9Y3M8 1113 aa8.44□□□□□ -1.06
SCFD1-221ENST00000556534 ZBTB42B2RXF5 422 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 EHHADHQ08426 723 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 CHSY3Q70JA7 882 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 BTBD6Q96KE9 485 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 CITED4Q96RK1 184 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 RBCK1Q9BYM8 510 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 IGFLR1Q9H665 355 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 DCTN4Q9UJW0 460 aa8.43□□□□□ -1.06
SCFD1-221ENST00000556534 GPR182O15218 404 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 PSAPP07602 524 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 PLAURQ03405 335 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 CHRDQ9H2X0 955 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 ENAMQ9NRM1 1142 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 CNTN3Q9P232 1028 aa8.42□□□□□ -1.06
SCFD1-221ENST00000556534 TNFRSF21O75509 655 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 CYP2E1P05181 493 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-221ENST00000556534 DGKGP49619 791 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 MLLT1Q03111 559 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-221ENST00000556534 TTC16Q8NEE8 873 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 NEDD1Q8NHV4 660 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 SNX29Q8TEQ0 813 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 NSUN5Q96P11 429 aaKnown RBP8.41□□□□□ -1.06
SCFD1-221ENST00000556534 STK17AQ9UEE5 414 aa8.41□□□□□ -1.06
SCFD1-221ENST00000556534 FOXD3Q9UJU5 478 aaPredicted RBP8.41□□□□□ -1.06
SCFD1-221ENST00000556534 ALBP02768 609 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 ALAS2P22557 587 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 MAPK1P28482 360 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 COL13A1Q5TAT6 717 aaPredicted RBP8.4□□□□□ -1.06
SCFD1-221ENST00000556534 TTC39BQ5VTQ0 682 aaPredicted RBP8.4□□□□□ -1.06
SCFD1-221ENST00000556534 KANK3Q6NY19 840 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 TMC7Q7Z402 723 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 ADAMTS8Q9UP79 889 aa8.4□□□□□ -1.06
SCFD1-221ENST00000556534 AMPD1P23109 780 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 PDE3BQ13370 1112 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 PCSK7Q16549 785 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 C20orf204Q6ZNR8 217 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 C1orf127Q8N9H9 656 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 KANSL3Q9P2N6 904 aa8.39□□□□□ -1.07
SCFD1-221ENST00000556534 KIF4AO95239 1232 aa8.38□□□□□ -1.07
SCFD1-221ENST00000556534 CPB1P15086 417 aa8.38□□□□□ -1.07
SCFD1-221ENST00000556534 SNRPNP63162 240 aaKnown RBP8.38□□□□□ -1.07
SCFD1-221ENST00000556534 FAM35AQ86V20 835 aa8.38□□□□□ -1.07
SCFD1-221ENST00000556534 ALKBH8Q96BT7 664 aaKnown RBP8.38□□□□□ -1.07
SCFD1-221ENST00000556534 LPIN3Q9BQK8 851 aa8.38□□□□□ -1.07
SCFD1-221ENST00000556534 GZF1Q9H116 711 aaPredicted RBP8.38□□□□□ -1.07
SCFD1-221ENST00000556534 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.38□□□□□ -1.07
SCFD1-221ENST00000556534 FAM181BA6NEQ2 426 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms